similar to: How to update JGR

I remember JGR installation on SuSE 10.3 as a nightmare that eventually I overcame with JGR designers' help. I have installed SuSE 11.1, latest R version and am trying to install JGR again. It is still a nightmare. I have followed the guidelines on http://jgr.markushelbig.org/JGR_on_Linux.html I have made sure I have the so R libraries. I have installed java-1.6.0-sun and its development

When I need to stop a running R script on Windows or Mac I just use the <esc> key which kills the current script and returns the control to R interpreter. But when I run R from JGR the <esc> is useless as well as the other available keyboard keys. Just recently not even clicking on the STOP-symbol (a big red X) placed on JGR top menu bar could terminate a process that had entered a

I have upgraded R and am currently running the following version: R version 2.10.1 Patched (2010-02-20 r51163) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 The characteristics of my system are the following: OS: Linux 2.6.27.29-0.1-default x86_64 Current user: mauede@linux-326k System: openSUSE 11.1 (x86_64) KDE: 4.1.3 (KDE 4.1.3) "release

Sorry for this trivial question. I have just installed R on SuSE/Linux and cannot cope with the character terminal. I am going to install JGR that will make my life easier at searching for existing R functions/packages. In the meantime (higher-priority things to do) I would appreciate your answer. Thank you for your patience. Maura tutti i telefonini TIM! [[alternative HTML version

[Environment: Win XP, R 2.10.1] I'm trying to install the packages JGR and iWidgets required by the extracat package to make the interactive plots in the package work. I've tried various things, but nothing seems to work. Here is my most recent attempt, followed by my sessionInfo(). Does anyone have any suggestions how to make this work? > > library(extracat) Loading

Dear all Is it possible to get basic colour highlighting for inputs and outputs in the R terminal? I am looking for something similar to what GUIs provide, such as JGR and (I think) the Windows R GUI: colouring all inputs in red, and all outputs in blue. All this in a colour-aware console (in my case, on Linux). I've been looking into xterm256 and highlight, but I am sofar unable to do with

Is there a way to force the number of ticks along an axis ? I read the on-line documentation and tried many combinations of all available parameters from functions par(), axTicks(), axis(), plot() ... but no luck ! Thank you very much, Maura tutti i telefonini TIM! [[alternative HTML version deleted]]

http://gigamail.rossoalice.alice.it/messages/readMessageFrameset.aspx?DeliveryID=ba40cf18-29db-4404-a3ce-af26f760ecf9 Please, paste the website address above shown in your web browser address field. Make sure the whole string is pasted with no space or any other character. Telecom couldn't generate more clumsy website addresses .... Sorry for that. Thank you in advance, Maura tutti i

I recently updated R 2.10.1 Patched (2010-02-20 r51163) This morning I reinstalled biomaRt using biocLite. Now I can no more connect to biomaRt and even the following instruction is hanging for a while until the same error message pops up. > listMarts() Error in value[[3L]](cond) : Request to BioMart web service failed. Verify if you are still connected to the internet. Alternatively the

Thank you for your prompt answer. The breathing signal observations are the amplitude values as a function of time and phase. According to our model the hidden states are the different breathing types. Subjects, whose respiratiion process is regular, are likely to breathe, keeping the same cycle pattern/type, for many consecutive cycles. therefore dwelling in the same hidden state. The more

I wonder whether R provides an interface to access miRecords data. Particularly, I am looking for extracting humans miRNA and target genes sequences. All such information is stored in there in a set of structured web site pages (http://mirecords.umn.edu/miRecords) I would greatly appreciate any suggestion even about other data bases from where it is possible to get the same sort of data. I had a

here is the message I get upon trying to upgrade R from the provided RPM package for SuSE 11.1 (http://cran.r-project.org): #### YaST2 conflicts list - generated 2010-02-15 14:00:50 #### nothing provides libreadline.so.6()(64bit) needed by R-patched-2.10.1-50.1.x86_64 [ ] do not install R-patched-2.10.1-50.1.x86_64 #### YaST2 conflicts list END ### I searched for the requested library

I require some assistance with JGR, but following the mailing list link from http://jgr.markushelbig.org/FAQ.html leads me to http://mailman.rz.uni-augsburg.de/mailman/listinfo/stats-rosuda-devel which responds with No such list stats-rosuda-devel I was previously subscribed to this mailing list and want to resubscribe, but where has it gone? Many thanks, Oliver Mannion Programmer COMPASS -

I am assigning subset of a matrix A [n,3] where n>1 to a temporary matrix TMP I do not know how many rows of A will be assigned to TMP because this is established by a run-time test. I expect TMP to be a matrix [m,3], m >=1 But when 1 row only is transferred from A to TMP then TMP becomes [3,1] rather than [1,3] How can I avoid this unwanted transpose operation ? THank you in advance,

I cannot find any R function or operator that performs a binary AND operation, as performed by Fortran built-in function "iand". Ideally either R operator "&" or "&&" should do that. But some tests proved they do not: > A<- 1 > B <- 2 > A [1] 1 > B [1] 2 > as.numeric(A&B) [1] 1 > as.numeric(A&&B) [1] 1 The binary

I tried to use R version of package I noticed the original MatLab Pckage is much better documented. I had a look at the R demo code "gtm_demo" and found that variable Y is used in advanced of being created: I wrote my own few lines as follows: inDir <- "C:/Documents and Settings/Monville/Alanine Dipeptide/DBP1/DHA" setwd(inDir) T <-

I knowf R functions ca be called passing some parameters. My first question is: how are parameters passed to R functions ? Browsing through R archives I found an answer confirming taht parameters can be passed to the called function by value. I wonder whether passing the parameter address is possible somehow to allow the function to actually change its value. My second question is about

After some headache with debugging my script, I finally isolated the problem taht I am going to illustrate in the following example. I expected matrix nrow to decrease consistently till 1. Instead, when the matrix is left with one row only, its nrow jumps to 2 because the matrix gets transposed. How come ? Thank you, Maura > B <- c(1,2) > B <- rbind(B,c(3,4)) > B <-

Can biomaRt connect to data base "http://mirecords.umn.edu" or a branch of it ... for instance the validated miRNAs list ..? Thank you very much. Maura tutti i telefonini TIM! [[alternative HTML version deleted]]

Is there any R package that implements the same capability of MatLab toolbox called SimBiology ? We are expecially interested in protein-protein interactions and network analysis. As far as I know SimBiology implements a system of ODEs reflecting the kinetic chemical reactions. We would be more interested in stochastic simulations. Thank you in advance. Maura tutti i telefonini TIM!