similar to: how to manipulate object in specific environment?

Hi dear all, In my laptop(ubuntu 11.10 64bit), I maintained a released R (2.14) and a developmental R, I can specify qplot(..., alpha = ) in R 2.14 , but when I try to use transparency in developmental R, I got a warning message and the plot is clearly not I want. minimal example: > qplot(data = mtcars, x = mpg, y = cyl, alpha = cyl) Warning message: In grid.Call.graphics(L_points, x$x, x$y,

Hi dear all, In my laptop(ubuntu 11.10 64bit), I maintained a released R (2.14) and a developmental R, I can specify qplot(..., alpha = ) in R 2.14 , but when I try to use transparency in developmental R, I got a warning message and the plot is clearly not I want. minimal example: > qplot(data = mtcars, x = mpg, y = cyl, alpha = cyl) Warning message: In grid.Call.graphics(L_points, x$x, x$y,

Hi dear all, I am wondering if there is a function existing in R that did the quadratic bezier curve interpolation? I hope to generate a bezier curve based on three sets of points: two end of the line and a control point. Thanks in advance. Tengfei -- Tengfei Yin MCDB PhD student 1620 Howe Hall, 2274, Iowa State University Ames, IA,50011-2274 [[alternative HTML version deleted]]

Hi dear all I am currently using Ubuntu 9.10 (karmic) and R 2.10, I can find a R release that support "karmic" in cran under ubuntu directory, I plan to update my laptop to Ubuntu 10.04 after April 30, since I have to use some new features or new version in it, e.g. QT 4.6, I don't know if there is going to be a R release that will support this newly released Ubuntu? Thanks in

Hi dear all I am currently using Ubuntu 9.10 (karmic) and R 2.10, I can find a R release that support "karmic" in cran under ubuntu directory, I plan to update my laptop to Ubuntu 10.04 after April 30, since I have to use some new features or new version in it, e.g. QT 4.6, I don't know if there is going to be a R release that will support this newly released Ubuntu? Thanks Best

Dear All, I came across an error message recently when constructing a reference class, an example is attached below, it looks like only if I call a specific method in advance, otherwise it cannot be found in defined method without using .self, this make it difficulty that sometimes in my initialize method, I need to call other method defined in the same reference class, the workaround for this is

Hi dear all, I cannot find ggExtra source code or install it by install.packages("ggExtra", repos="http://R-Forge.R-project.org") I am really interested in one of the functions inside called "align.plots", but cannot find the package on-line. Do I miss something? or is there any function similar to that I can easily align multiple plots on the same x-axis on one

Hello, I have a data.frame: name    col1    col2    col3    col4 AA    23    54    0.999    0.78 BB    123    5    1    0.99 AA    203    98    0.79    0.99 I want to get mean value data.frame in terms of name: name    col1    col2    col3    col4 AA    113.0000  76.0000   0.8945   0.8850 BB    123.00   5.00   1.00   0.99 I tried to use by function: >aa<-by(test[,2:5], feature, mean)

I recently started using ubuntu 9.10 and I am using gedit editor and R plugin for writing R code. To install any package I need to do: $ install.packages() //window pop-up for mirror selection //then another window pop up for package selection. After this as long as I am not exiting, the function of the newly installed packages are available. After I exit (i use to put 'no' in 'save

I'm a very new user of R, The problem I got is when I have lots of data table, 3 columns and 100 rows assigned to a variable x. how can I transform the table into a external file excel or other files without losing any information. So that make the data look nicer. -- View this message in context: http://r.789695.n4.nabble.com/How-to-extract-data-table-tp2075750p2075750.html Sent from the R

Hi, list- ?? I've got a large list of multi-column data and I'd like to filter it according to a threshold, such as, "show me the values that are above 0.4 for each line." For instance, if the line of data were: > line v1 v2 v3 v4 v5 v6 v7 v8 v9 1 -0.32 0.66 -0.35 -0.82 0.38 0.66 -0.02 -0.11 -0.64 I can do this > line[,line >= 0.4]

Dear All, Thank you kindly for such detailed replies. I was looking to overlay data using algorithms so that i am able to tell which genes are differentially expressed due to changes in copy number. I did a pubmed search and found only 7 literature pieces all of which use in-house algorithms. I am yet to explore Gviz since it wouldn't work on R 2.14, would try it after upgrading to R 2.15.

I am really new with R Graphical user interfacefunctions. I am developing a software package to calculate pKa (biochemistry) but I want to make it look aesthetically pleasing and make it user friendly. I have heard that R has some GUI (Graphical user interface) and you can do some really cool stuff out there. What are the limitations and what are some resources for help. I have found a couple of

Hello, Can anyone please suggest any packages in R that can be used to overlay gene expression data on SNP (affymetrix) copy number ? Thanks, Ekta Senior Research Associate Bioinformatics Department Jubilant Biosys Pvt Ltd, #96, Industrial Suburb, 2nd Stage Yeshwantpur, Bangalore 560 022 Ph No : +91-80-66628346 The information contained in this electronic message and in any attachments to this

Good afternoon, I have been experiencing a lot of crashes working with large vectors in R. Specifically, I am using XTS of length of minimum 120k elements. My problem is that I cannot display the vector (otherwise R crashes), I cannot plot it either (otherwise R crashes). That could be solved by reducing the amount of points. However, I have been performing some statistical opreations on is

Hi dear all It's the first time for me to install a developmental version of R, I came across following errors, my system is DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS" I downloaded the dev version of R in cran R source, and downloaded the recommended packages by using wget as described in R manual, and run

Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system: begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory

The following looks like an 'eapply' bug to me: t/subtest> e <- new.env() t/subtest> e$tempo <- quote( 1+'hi') t/subtest> lapply( ls( e), function( x) length( get( x,e))) [[1]] [1] 3 # seems reasonable-- e$tempo is a 'call' object of length 3 t/subtest> eapply( e, length) Error in 1 + "hi" : non-numeric argument to binary operator

eapply() works on most environments, but not on baseenv(). For example, > x <- 1 > eapply(globalenv(), function(x) x) $x [1] 1 > eapply(baseenv(), function(x) x) list() I'm probably not going to have time to work on this before 2.3.0, but I don't think it's really urgent; if no one else fixes it first I'll do it after the release. Duncan Murdoch

Dear R People: I want to get the class of all of the objects in my directory. I was trying: do.call(class,list=ls()) but got an "unused argument error". I'm sure it's simple, but I'm just not seeing it. Any help would be much appreciated. Sincerely, Erin -- Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston -