similar to: Lattice Plot formatting problem/s

Hi everyone, my apologies in advance if I'm overlooking something simple in this question. I am trying to use R's survey package to make a direct method age-adjustment to some complex survey data. I have played with postStratify, calibrate, rake, and simply multiplying the base weights by the correct proportions - nothing seems to hit the published numbers on the nose. I am trying to

Hi R users, Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array: #!/bin/bash -ue #PBS -m ae #PBS -M my email #PBS -J 1-45 #PBS -A my username #PBS -N job name #PBS -l resources #PBS -l walltime cd $PBS_O_WORKDIR module load R/2.14.1 R CMD INSTALL -l /path/to/library spatstat R CMD BATCH

Hi R-users, I have a problem running my R code on a Linux cluster. What I did was write a .pbs file to instruct the cluster on what to do and how: #!/bin/sh #PBS -m ae #PBS -M uqlcatta@uq.edu.au #PBS -A uq-CSER #PBS -N job1_lollo #PBS -l select=1:ncpus=1:NodeType=fast:mem=8GB #PBS -l walltime=999:00:00 cd $PBS_O_WORKDIR source /usr/share/modules/init/bash module

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Please remove me from the mailing list -----Original Message----- From: r-help-bounces at stat.math.ethz.ch To: Shengqiao Li Cc: r-help Sent: 24/03/2004 10:10 AM Subject: Re: [R] Rmpi and PBS On Tue, 2003-12-30 at 08:39, Shengqiao Li wrote: > Hello: > > Anybody knows how to run Rmpi through PBS (Portable Batch System) on a > cluster computer. I'm using a supercomputer which

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

I'm new to R so forgive me if this seems like a simple question: So I have table where the row titles are string variables. When I plot the data with rows along the x-axis, the data is ordered alphabetically as opposed to the order of the table. How can I preserve the row order of the table in the plot? Thanks in advance. -- View this message in context:

Hi, I am trying to use datas written in the stdin to run scriptindex, (I am working with Windows and not Unix). And Scriptindex does not work, the database is created but the datas are not indexed. Thanks by advance Stephane

Hi everybody, I m a newbie with Wine, but I tried to launch Maple, NotePad, etc... and it works ! Great ! My problem is that I can t launch MS Office (Winword 2000, etc...). The output is the picture of Word2000 (the logo), and then the program is stopped... Here is the output : ***** fixme:system:SystemParametersInfo16 Unknown option 70. fixme:system:SystemParametersInfoA SPI_GETHIGHCONTRAST

CentOS 6.6 I've got two servers, server1 and hbs (honkin' big server). Both are running munge, and torque... *separately*. My problem is that I've got users who want to be able to submit from server1 to hbs. I see that munged can be pointed to an alternate keyfile... but is there any way to tell qsub what to use? (And yes, I got on the torque users' list, and I'm trying

Hi all! At my university, we use for compatibility reasons a windows shared printer running samba server. The main thing is that I can't get smbprint to send pages to the printer. And, more amazing, I get this message: "Unable to connect to SAMBA host, will retry in 60 seconds...ERROR: Connection failed with error NT_STATUS_WRONG_PASSWORD" only when I give the GOOD password! :-/

Hi, I use R 1.6.2 under Mandrake9.0. I've got a problem with the postscript files I try to creat. When I look to the file with ghostview it's ok. When I want to print it, I've got a blank page or a black page (fill of black encre) I changed the printer (guessing it was my driver printer), it was the same. Does anyone had the same problem and resolved it ? -- Cordialy

Wayne, Hello, I saw a post of yours out on samba.org and was wondering if you might be able to shed a little light on a problem I'm having with rsync. My rsync source files are all off of nfs mounts and the destination directories are all nfs mounts. The owner and groups all end up as nobody/nobody on the destination, despite being all sorts of owners and groups on the source. Have you

Dear sir, I want to submit R batch jobs (e.g. 5) under the linux cluster by the script file "do_mul". The script file "do_mul" " #!/bin/bash export var for var in $(seq 1 5) do qsub -v var do_test done exit 0 " Through "do_mul", 5 "do_test" script files are submitted to the cluster. The script file "do_test": " #!/bin/bash -l

I use ssh in a batch environment (www.pbspro.com) and am using host based authentication to allow sshes between some resources. When I converted from openssh 3.1 to newer versions (up to an including 3.8 where ssh-keysign was moved to a standalone binary) I had issues with ssh-keysign failing with the error "bad fd". A little exploring showed that this was happening because in the

Hi, The first (maybe) LLVM social in Beijing will happen on May 19th, 2018. Everyone interested in LLVM related projects is invited to join. Event details is at https://github.com/hellollvm/website/blob/master/README.md Presentations are welcome :-) Looking forward to meet you ! -- Best wishes, Wei Wu (吴伟)

Hey Valeri - IIRC, midway (and maybe midway2?) use slurm for job scheduling. I don't know how many of your faculty use both your nodes and midway, but maybe consolidating on to a single scheduler would be easier for them? (also, it's been a while ... hi! ? ) Richard -----Original Message----- From: CentOS <centos-bounces at centos.org> On Behalf Of Valeri Galtsev Sent: Friday,