similar to: Adding a distance scale to a plot?

Dear All, I was looking for the color index in?image function,?such as from topo.colors(n) and etc. but still never found it. For instance, from the help menu. ########################################### # Volcano data visualized as matrix. Need to transpose and flip # matrix horizontally. image(t(volcano)[ncol(volcano):1,]) # A prettier display of the volcano x <- 10*(1:nrow(volcano)) y

The line contour(volcano, x, y, l, col = "yellow", lty = "solid", add = TRUE) needs to be changed to contour(x, y, volcano, col = "yellow", lty = "solid", add = TRUE) A patch is appended below. -k *** demos/graphics/graphics.orig Thu Apr 17 11:02:39 1997 --- demos/graphics/graphics Thu Apr 17 11:03:08 1997 *************** plot(numeric(0), numeric(0),

hi dear R crew. may i request the script for volcano plot. if able, pls include any tips about volcano plot. thank you. [[alternative HTML version deleted]]

can you recommend a good manual for R that starts with a data set and gives demonstrations on what can be done using R? I downloadedR Langauage definition and An introduction to R but haven't found them overly useful. I'd really like to be able to follow some tutorials using a dataset or many datasets. The datasets I have available on R are Data sets in package 'datasets':

Dear all, I am using filled.contour and my x-axis consists of a vector of dates, formatted using as.POSIXct. When I assign this vector to x in filled.contour, the x-axis in the plot is correctly formatted as dates. However, when I use plot.axes=axis(1) in filled.contour the x-axis is not correctly formatted. I need to opt for the latter because I want to add additional lines and points to the

Applying the following patches closes the following task (part 1 was already taken care of). TASK: New Problems STATUS: Open FROM: <Kurt.Hornik@ci.tuwien.ac.at> New minor remarks: * The documentation for `image' still has the old order z, x, y. * Perhaps one should add `par(ask = T)' in the image demo? * Perhaps one should save the original value

I am using wireframe from the lattice package, with the shade option set to TRUE. When I output to PDF or Postscript, a line gets drawn around each polygon of my surface which causes ugly Moir? effects and doesn't make sense in my application (think the plot of Maunga Whau--gridlines don't make sense). This does not happen when I display on the screen-- then I just get the surface as

Dear friends, I am trying to produce Contour Plot with R, but there are some NA in my data matrix. After I ran the following R script, I got the error message:"no proper `z' matrix specified". Does anybody know how to plot contour chart with R for the non-strict matrix? Thank you in advance!!!

Dear all, I would like to generate a filled.contour plot with log x and y axis, however using: filled.contour(as.line,log="xy") results in a warning message. Does anybody knos what to do? Thanks Thomas

Greetings, Mr Bivand and all the other authors, I'm glad to say that there are some encouraging advances in my debugging progress. Thanks to Mr Brivand, I could check the packages installed on my oparation system. I have found that I have only one of the two font files installed-'xorg-x11-75dpi-fonts' installed and left the other one. So I have it ('xorg-x11-100dpi-fonts')

Hi R-help community, Can anyone tell me why, while using : x <- seq(as.Date("2001-01-01"),as.Date("2001-01-01") + nrow(volcano)-1,1) y <- seq(1, ncol(volcano),1) when I plot the volcano matrix with that command : filled.contour(x,y,volcano) the graph has a Date format on X-axis, ok ... ... but when adding a contour plot to the filled contour, using this

Hi list, I wonder if anyone has had this experience with squishplot() in the TeachingDemos package. Taking the example from the ?image help page, library(TeachingDemos) x <- 10*(1:nrow(volcano)) y <- 10*(1:ncol(volcano)) layout(matrix(c(1,2,3,4),ncol=2,byrow=TRUE),height=c(2,1)) ## 1st plot op <- squishplot(range(x),range(y),1) image(x, y, volcano, col = terrain.colors(100)) par(op)

Hi! Whenever I save a graphic in ps/eps format generated by filled.contour or image, an undesired grid is added to it (not visible on the X11 screen). For example: postscript("volcano.eps") filled.contour(volcano,col=gray(seq(0,1,,50)),levels=seq(min(volcano),max(volcano),,50)) dev.off() Any ideia how to eliminate this grid? Thanks, Rachel [[alternative HTML version deleted]]

Hello, I would like to suggest the following change to image.default in src\library\graphics\R\image.R: 98c98 < plot(NA, NA, xlim = xlim, ylim = ylim, type = "n", xaxs = xaxs, --- > plot(x[1], y[1], xlim = xlim, ylim = ylim, type = "n", xaxs = xaxs, This provides all the support of axis.POSIXt that plot.default gives, currently the default new plot in

Como usas la función image puedes consultar la ayuda ?image o help(image) y encontrarás el siguiente ejemplo donde se usa un diferente color Palette (mencionada por pepeceb en su respuesta). x <- 10*(1:nrow(volcano)) y <- 10*(1:ncol(volcano)) image(x, y, volcano, col = terrain.colors(100), axes = FALSE) # O puedes usar directamente el número para indicar el color image(x, y, volcano, col =

Searched my R reference docs*, and the Rseek, but evidently I've overlooked this capabilty.    Is it possible to produce a 3d Barplot using R?   For example would like to have a three axis bar plot - \ x-axis = location(discrete), y-axis = data value, z-axis = frequency of value occurance (of location and value)   Would also if could also do something like what "qplot" allows,

Given the example: R> (levs <- quantile(volcano,c(0,0.1,0.5,0.9,0.99,1))) 0% 10% 50% 90% 99% 100% 94 100 124 170 189 195 R> levelplot(volcano,at=levs) How can I make the key categorical with the size of the divisions equally spaced in the key? E.g., five equal size rectangles with labels at levs c(100,124,170,189,195)? Apologies if this is obvious. -A R> version

Hello. My name is Akashah. i work at metabolic laboratory. From my study, i found that volcano plot can help a lot in my section.  i already studied about the volcano plot and get the coding to run in R software, unfortunately, there is may be something wrong with the coding. This is because  no graph appear, but no error (blue color text) was shown on the R console. Below is the coding for

Hi I am using the ggplot2 package for the volcano plot and I am using the following code for the same: g = ggplot(data=data, aes(x=data[11], y=-log10(data[12]), colour=threshold)) + + geom_point(alpha=0.4, size=1.75) + + opts(legend.position = "none") + + xlim(c(-10, 10)) + ylim(c(0, 15)) + + xlab("log2 fold change") + ylab("-log10 p-value") data[11] is a

Dear R gurus, I have got stuck on how to customise the colorkey generated by levelplot and contourplot, in the lattice package. This best illustrated by an example: library(lattice) levelplot(volcano^20/1e45,at=c(0,0.001,0.01,0.1,1,10)) The reason for raising the volcano dataset to the 20th power is to create a dataset with a large vertical exaggeration - this is similar in nature to the data