Displaying 20 results from an estimated 10000 matches similar to: "Getting Rd pages right for redefined S3 generic"
2010 Mar 08
1
MaxDiff Scaling
Dear R List,
I have found that R handles a remarkable number of analytic tasks that are
overlooked by major commercial packages. However, I have not found an R
package that handles MaxDiff Scaling - does one exist?
Thanks in Advance,
Stephen Brand
2013 Oct 21
3
speeding up "sum of squared differences" calculation
All,
I am using a sum of squared differences in the objective function of an optimization problem I am doing and I have managed to speed it up using the outer function versus the nested for loops, but my suspicion is that the calculation could be done even quicker. Please see the code below for a simple example. If anyone can point out a faster way I would appreciate it greatly.
Thanks,
Roger
2009 Jan 23
2
R for Computational Neuroscience?
Hi all,
I've noticed that many computational neuroscience research groups use
MATLAB. While it's possible that MATLAB may have some features
unavailable in R, I suspect that this may instead simply be a case of
costly tradition, where researchers were taught MATLAB as students and
pay for it as researchers because it's all they know.
I'd like to attempt to break the cycle by
2009 Aug 24
6
CRAN (and crantastic) updates this week
CRAN (and crantastic) updates this week
New packages
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Updated packages
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New reviews
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This email provided as a service for the R community by
http://crantastic.org.
Like it? Hate it? Please let us know: cranatic at gmail.com.
2007 May 09
3
One for the wish list - var.default etc
I was working on a permutation-like variant of the bootstrap for smaller samples, and wanted to be able to get summary stats of my estimator conveniently. mean() is OK as its a generic, so a mean.oddboot function gets used automatically. But var, sd and others are not originally written as generic; they have to be explicitly masked by a package or new declaration.
It would have been nice if
2007 May 29
0
new packages psyphy and MLDS
New packages psyphy and MLDS are available on CRAN:
psyphy ncludes an assortment of functions
useful in analyzing data from pyschophysical experiments. It
includes functions for calculating d' from several
different experimental designs, links for mafc to be
used with the binomial family in glm (and possibly
other contexts) and selfStart functions for estimating gamma values
2007 May 29
0
new packages psyphy and MLDS
New packages psyphy and MLDS are available on CRAN:
psyphy ncludes an assortment of functions
useful in analyzing data from pyschophysical experiments. It
includes functions for calculating d' from several
different experimental designs, links for mafc to be
used with the binomial family in glm (and possibly
other contexts) and selfStart functions for estimating gamma values
2007 Sep 14
6
replace NA value with 0
Hi,
how can I replace NA value with 0:
1991 217 119 103 109 137 202 283 240 146 NA
1992 270 174 149 144 166 239 278 237 275 NA
1993 146 111 104 89 98 131 153 148 175 NA
1994 177 123 146 124 121 200 266 191 240 106
1995 145 98 95 89 95 130 183 161 164 129
1996 145 98 89 90 93 138 158 131 161 161
1991 217 119 103 109 137 202 283 240 146 0
1992 270 174 149 144 166 239 278 237
2014 Mar 27
1
Conflicting definitions for function redefined as S4 generics
I fully agree, Michael, that this would be a great thing to have! I have
often wondered why R and the standard packages are still sticking so
much to the old-style S3 flavor though S4 is part of standard R. I
acknowledge that backward compatibility is important, but, as far as I
got it, redefining a function or S3 generic as an S4 generic should not
harm existing functionality (if done
2013 Jun 12
2
grDevices::convertColor XYZ space is it really xyY?
grDevices::convertColor has arguments 'from' and 'to' which can take on value 'XYZ'. Can someone confirm that 'XYZ' is the same as the CIE chromaticity coordinates that are also sometimes refered to as 'xyY' in the literature? Or are these the CIE tristimulus values? It looks to me like the first case is true, but I would appreciate hearing from one of
2009 Dec 08
4
lower.tail option in pnorm
Hi,
I would have thought that these two constructions would
produce the same result but they do not.
Resp <- rbinom(10, 1, 0.5)
Stim <- rep(0:1, 5)
mm <- model.matrix(~ Stim)
Xb <- mm %*% c(0, 1)
ifelse(Resp, log(pnorm(Xb)), log(1 - pnorm(Xb)))
pnorm(as.vector(Xb), lower.tail = Resp, log.p = TRUE)
> ifelse(Resp, log(pnorm(Xb)), log(1 - pnorm(Xb)))
[1] -0.6931472 -1.8410216
2013 Mar 18
4
plotting CIE chromaticity diagram?
Has anyone plotted or is it possible to plot
CIE *xy* chromaticity diagram
http://en.wikipedia.org/wiki/File:CIE1931xy_blank.svg
I need this plot in color.
ishida
[[alternative HTML version deleted]]
2009 Mar 18
1
Why S4 methods of S3 'base' generics are not used in 'base' functions ?
Dear list,
It seems that S4 methods defined for an S3 'base' generic
are not used in 'base' functions.
This can be problematic when 'base' functions start with
something like 'as.matrix'.
### START R code
setClass("classA", contains = "matrix",
representation(realData = "numeric"))
setMethod("as.matrix",
2014 Mar 27
3
[Bioc-devel] Conflicting definitions for function redefined as S4 generics
On 03/27/2014 02:13 AM, Ulrich Bodenhofer wrote:
> I fully agree, Michael, that this would be a great thing to have! I have
> often wondered why R and the standard packages are still sticking so
> much to the old-style S3 flavor though S4 is part of standard R. I
> acknowledge that backward compatibility is important, but, as far as I
> got it, redefining a function or S3 generic as
2023 Jan 28
1
lines through points in lattice legend
On Sat, Jan 28, 2023 at 2:49 PM Kenneth Knoblauch
<ken.knoblauch at inserm.fr> wrote:
>
> Hi,
>
> I'm struggling to find if there is a simple way to make the lines and points overlap in a legend for a lattice plot using auto.key. Here is a toy example of what doesn't work (for me) as the lines and points are adjacent rather than overlapping:
>
> library(lattice)
2007 Sep 03
3
plotting predicted curves with log scale in lattice
Hi,
I was taken off guard by the following behavior in a lattice plot.
I frequently want to add a predicted curve defined at more
points than in the formula expression of xyplot. There have
been numerous examples of how to do this on r-help, but I
still often struggle to make this work. I just realized that
specifying one of the axes on a log scale does not guarantee
that the added data for a
2010 Feb 28
3
Change the scale on a barplot's y axis
I have grades data. I read them from a csv in letter-grade format. I
then converted them to levels
levels(grades$grade)=c('A+','A','A-','B+','B','B-','C+','C','C-','D+','D','D-')
And then to numbers
grades$gp=grades$grade
levels(grades$gp)=c(4.3,4.0,3.7, 3.3,3.0,2.7, 2.3,2.0,1.7, 1.3,1.0,0.7)
2005 Mar 30
6
French Curve
Dear R experts,
Did someone implemented French Curve yet? Or can anyone point me some
papers that I can follow to implement it?
thanks in advance for your help.
Paul
2023 Jan 28
2
lines through points in lattice legend
Hi,
I'm struggling to find if there is a simple way to make the lines and points overlap in a legend for a lattice plot using auto.key. ?Here is a toy example of what doesn't work (for me) as the lines and points are adjacent rather than overlapping:
library(lattice)
d <- data.frame(x = 1:2, y = 1:4, f = factor(letters[1:2]))
xyplot(y ~ x, d, groups = f, type = "b",?
pch =
2015 Jan 16
1
S3 generic method dispatch on promises
Dear R friends
I wanted a function to make a simple percent table that would be easy for
students to use. The goal originally was to have a simple thing people
would call like this
pctable(rowvar, colvar, data)
and the things "rowvar" and "colvar" might be names of variables in data. I
wanted to avoid the usage of "with" (as we now see in the table help).
Then