similar to: read.delim skips first column (why?)

Hi group, I found a module for adaptive kernel density estimation for Stata users, but unfortunetly I don't have access to Stata, can I find a similar approach using R? Thank u so much 4 ur time. [[alternative HTML version deleted]]

Dear all, I need to read an ASCII file with diffent length lines. This is what is contained in the file gene.txt: 1st line ID description snp_id genotype 2nd line 10003 Low rs152240 3rd line 10003 Moderate rs189011 TC 4th line 10004 Conservative rs152240 GC 5th line 10004 Bad rs154354 6th line 10013 Bad rs152240 7th line 10019 Conservative rs152240 AC etc... This is what I would like to obtain

Dear All, The following code extracts from NCBI very nice output for ONE allele of a SNP (often the allele with the second largest frequency - usually termed the minor allele). It gives an average minor allele frequency from all NCBI sources (which is what I want, except I'd like the addition of data for all the other alleles of one SNP) plus a table of minor allele frequencies from each

I'm new to R (previously used SAS primarily) and I have a genetics data frame consisting of genotypes for each of 300+ subjects (ID1, ID2, ID3, ...) at 3000+ genetic locations (SNP1, SNP2, SNP3...). A small subset of the data is shown below: SNP_ID SNP1 SNP2 SNP3 SNP4 Maj_Allele C G C A Min_Allele T A T G ID1 CC GG CT AA ID2 CC GG CC AA ID3 CC GG nc AA

I have found a strange "ifelse" behaviour (I think) This works: > ifelse(T,1+1,1+2) [1] 2 > ifelse(F,1+1,1+2) [1] 3 Maybe I missed something about R internals, but why > ifelse(T,print("hello"),print("goodbye")) [1] "hello" [1] "hello" > ifelse(F,print("hello"),print("goodbye")) [1] "goodbye" [1]

minimal reproducible example plot(1,1) identify(1,1) # or locator() now, trying to close the window by clicking on the cross of the upper right corner causes Rgui (and Rterm) to crash. I see the same behaviour on 2 different Windows PC (one with Win 8.1 and one with Win 10). I did not see the problem in linux (see below) WINDOWS ************** > sessionInfo() R version 3.3.0 beta

Dear Sir/Madam, I found your email address and your correspondence with R-users. I hope you could help me with this question about the function "ur.ers" in the package of "urca". It is an improved unit root test (Elliott et al. 1996 Econometrica). Do you know how to extract the value of the test statistic from the output? The only thing I can get is the print-out of all

Dear List I'm trying to install a package not present in cran named A2R ( http://addictedtor.free.fr/graphiques/RGraphGallery.php?graph=79) After running the demo script I retrieve the following error: cannot change value of locked binding for '._a2r_counter' Please could someone give to me a tip about my error? Thank you very much Here is my sessionInfo() R version 2.15.0

Dear all, I encountered a problem when compiling the source of R patched 2.10.0 r50499 (19-11-2009) linked to ACML single threaded (4.2.0 or 4.3.0) OS: openSuSE 11.0 x86-64 make fails when it comes to installing mgcv with the following [snip] ** R ** inst ** preparing package for lazy loading Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : non esiste un pacchetto chiamato

Hi, when running the following on a fresh R, library("IRanges") annotation showMethods("annotation") Biobase:::annotation showMethods("annotation") I get (see the "^^^^^" marked output at the bottom): > library("IRanges") Carico il pacchetto richiesto: 'IRanges' The following object(s) are masked from package:base :

If of any help, I can reproduce this (on Windows 7) back to at least R 3.0.3 but it's not there in R 3.0.0. (I have *not* checked with R 3.0.1 and 3.0.2 which I don't have installed). /Henrik On Tue, Apr 5, 2016 at 8:23 AM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > Thanks, I'll track this down. > > Duncan Murdoch > > > On 05/04/2016 9:35 AM,

Dea-R community. I'd like to draw your attention to an issue I have recently encountered while doing my current data analysis. I've got an unexpected (to me) result from the command: > augPred(lmList(my.object)), 'my.object' being a grouped data frame of class: > class(my.object) [1] "nfnGroupedData" "nfGroupedData" "groupedData"

Fix several warnings and broken links. This series was generated against linux-next, but was rebased to be applied at docs-next. It should apply cleanly on either tree. There's a git tree with all of them applied on the top of docs/docs-next at: https://git.linuxtv.org/mchehab/experimental.git/log/?h=fix_doc_links_v2 Mauro Carvalho Chehab (21): ABI: sysfs-devices-system-cpu: point to

>>>>> "BDR" == Prof Brian Ripley <ripley at stats.ox.ac.uk> >>>>> on Tue, 13 May 2008 07:32:43 +0100 (BST) writes: BDR> This example does not crash in R 2.7.0, R-patched nor BDR> R-devel (r45677) for me (x86_64 F8 Linux.) It also BDR> does not crash with the CRAN build of R 2.7.0 on BDR> Windows XP. Neither does it

Mostly due to x86 and acpi conversion, several documentation links are still pointing to the old file. Fix them. Signed-off-by: Mauro Carvalho Chehab <mchehab+samsung at kernel.org> --- Documentation/acpi/dsd/leds.txt | 2 +- Documentation/admin-guide/kernel-parameters.rst | 6 +++--- Documentation/admin-guide/kernel-parameters.txt | 16 ++++++++--------

I assume this option was intentionally removed, and the man page should simply be updated...is this correct? ----- Forwarded message from Marco Bodrato <bodrato@gulp.linux.it> ----- Date: Sat, 28 Dec 2002 13:31:35 +0100 From: Marco Bodrato <bodrato@gulp.linux.it> Resent-From: Marco Bodrato <bodrato@gulp.linux.it> To: Debian Bug Tracking System <maintonly@bugs.debian.org>

On Thursday, May 30, 2019 1:23:53 AM CEST Mauro Carvalho Chehab wrote: > Mostly due to x86 and acpi conversion, several documentation > links are still pointing to the old file. Fix them. For the Italian documentation I just send I patch to fix them in a dedicated patch > > Signed-off-by: Mauro Carvalho Chehab <mchehab+samsung at kernel.org> > --- >

On Thursday, May 30, 2019 1:23:53 AM CEST Mauro Carvalho Chehab wrote: > Mostly due to x86 and acpi conversion, several documentation > links are still pointing to the old file. Fix them. For the Italian documentation I just send I patch to fix them in a dedicated patch > > Signed-off-by: Mauro Carvalho Chehab <mchehab+samsung at kernel.org> > --- >

On Sun, 03 Apr 2016 01:58:42 +0200 Dario Lesca wrote: > Please, someone can help me to resolve this systemd issue? systemctl reset-failed -- MELVILLE THEATRE ~ Real D 3D Digital Cinema ~ www.melvilletheatre.com

Stefano, Thanks for the bug report. On 14 November 2008 at 14:35, Stefano Costa wrote: | Package: r-base-core | Version: 2.8.0-1 | Severity: normal | | As in subject. The bug is reproducible on my machine with these | commands: | | > x <- rnorm(100) | > plot(density(x)) | > dev2bitmap("density.png") | Error in paste(shQuote(gsexe), " -dNOPAUSE -dBATCH -q