similar to: Randomizing a dataframe

Dear all, how can I, with R, transform a presence-absence (0/1) matrix of species occurrences into a presence-only table (3 columns) with the names of the species (1st column), the lat information of the sites (2nd column) and the lon information of the sites (3rd column), as given in the below example? Thanks a lot for your help! Christian my dataframe: site lat lon spec1 spec2 spec3 spec4

dear R-friends, i`ve got a large dataset of vegetation-samples with about 500 variables(=species) in the following format: 1 spec1 1 spec23 1 spec54 1 spec63 2 spec1 2 spec2 2 spec253 2 spec300 2 spec423 3 spec20 3 spec88 3 spec121 3 spec200 3 spec450 . . this means: sample 1 (grassland) with the species (=spec) 1, 23, 54, 63 is it possible to get a following data-structure for further

I would like to export a dataframe to a .csv using: >write.csv(dataframe,"dataframe.csv") but I need to add four "header" lines to the csv that are not part of the dataframe (which itself has a line of column headers). The difficulty (for me, at least!) lies in the requirement that certain elements of the header (X, Y and the number of "Q"s - please see example

Hello, I would like to reshape a dataframe into an array. This is kind a similar task as Excel performs with a Pivot table. To illustrate it: LOC <- factor(c(1,2,2,3,1,1)) SPEC1 <- c(0,0,23,0,12,11) SPEC2 <- c(1,2,0,0,0,4) df <- data.frame(LOC,SPEC1,SPEC2) # original dataframe a <-

While using DTrace to track down a problem recently, we came across an unexpected restriction: the compiler will not permit different speculations to be committed in the same instance of a probe identifier. For instance, consider the following useless D script: #!/usr/sbin/dtrace -s #pragma D option nspec=2 BEGIN { spec1 = speculation(); spec2 = speculation(); } END {

Hi, Can anyone pls help me in plotting the following data? The data-set contains company name, specification-1, specification-2. The graph would basically plot company name with specification-1 on x-axis, & specification-2 on y-axis. Simply put - company name should get classified into one of the four quardrants created by specification 1 & specification2. Thanks.

Hi, I wonder if anyone can help me with specifying a right model for my analysis. I am a beginner to lme methods and though have spent already many hours studying from various books an on-line helps, I was unfortunately not able to find a solution to my problem on my own. Data structure: I studied escape behavior of three species of a prey to a predator. The prey specimens (many) were in a

I am really a beginner of PRI ISDN board, I am wondering if there is a "quick start" chan_dahdi.conf configuration I could use. I tried to install two "FreePBX" boxes follow the instructions from "http://www.cadvision.com/blanchas/Asterisk/DahdiT1trunk.html" connected them between PRIs, It worked. And now if I refer the FreePBX "chan_dahdi.conf" it looks

Hi, If I have the follow situation: A dependent variable (i.e. number of insects) that is affected by an independent variable (i.e. rain). The problem is that the measure of rain affect the population in other moment. So there exit a lag between the rain and the number of insects. Exist in R any tool to find what is this lag? Explain better. Suppose that I have a linear relationship

Hi, I have a small simple data frame (attached) - to compare diversity of insects encountered in disturbed and unditurbed site. What i have is the count of insects - the total number of times they were encountered over 30 monitoring slots. Can someone please check for me to make sure how the 'community data matrix' for the diversity function needs to be oriented so that i'm

Hi everyone! I am a biologist from Argentina and have to solve this problem. I have an insect population obtained from 10 different nests and need to know its sex ratio. But as I cannot ensure insects independence I need to run a model where I can include the variable “nest” as with a random effect. The response variable has a binomial distribution (males or females). I’ve been reading for a while

Hello, I''ve done potencial replacement for RoR''s routing mechanism. It just works as an independent class so you can try bundled examples withou installing anything else. I didn''t integrated it into Rails (as a plugin?) because I don''t know if anyone would appreciate it etc. SiteMapper features: -------------------- 1. uses regexp mask to get variables from

Dear R users, I have a problem with something called "NaNs" in a nested mixed model. The background is that I have studied the number of insect nymphs emerging from replicated Willow genotypes in the field. I have 15 replicates each of 4 Willow genotypes belonging two 2 Willow species. Now I want to elucidate the effect of Willow genotype on the number of emerging nymphs. Previously I

Hello list! I have a problem with the function 'persp'. I have a data set with the variables X -> The X coordenate of the insect Y -> The Y coordenate of the insect deep-> how deep the insect buried into the soil. I would like to have a plot with a surface simulating the way the insect buried. Is it possible? If I type persp(x,y,deep) R gives me this error message Error in

On Thu, Jun 02, 2005 at 02:12:22PM -0700, Tanu Sharma wrote: > By randomization of functions I mean the manner in whch they are > called , so that has to do with address.I wish to randomize the order > of calls made to functions when a program is run. How would you "randomize the order of calls made to functions when a program is run" without changing the semantics of the

By randomization of functions I mean the manner in whch they are called , so that has to do with address.I wish to randomize the order of calls made to functions when a program is run. Reid Spencer <reid at x10sys.com> wrote:Can you explain a little bit more about what you mean by "randomize" functions or global variables? What aspect of them do you want to randomize? Their

I'm trying to make a glmm to identify the relationship between insect species richness with fragment size, isolation and time (different years). I already tried to analyse it using poisson distribution error, but I always face with the following warning: *glm.fit: fitted probabilities numerically 0 or 1 occurred * This is probably hapenning because my dataset has a lot of zeros. So, what

plot(1,2, ylab= paste("insects", expression(m^2), sep=" ")) I get insects m^2 I would like m to the 2 what is the problem? -- Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being

Dear R users, x-values (EI) = Adw, EG1, LA1, Ad1, LA2, LA3...(14 levels, insect stages) y-valus = antpop within the boxplot function x-values are ordered alphabetically Idea: x-values ranked by list order (insect stage: Egg stage 1 is followed by Larvae 1 and not by Egg stage 2 as it would be in an alphabetically order) Problems with the order(tapply()) function: variable lengths

I have written a function that goes through a database and calculates various metric scores and allocates them to a data set. For 400 of the 500 sites that I calculate these metrics for works fine and allocates the scores into the appropriate column. For some reason, some sites I run into the below problem: Here is what I am doing: > names(orig.metric) [1] "BenInsect"