similar to: Drawing dendrogram

Dear all, I have two sets of data (say set1 and set2) as follow: set1 x1 x2 x3 0.30 0.43 3.88 0.38 0.59 3.53 0.30 0.42 2.12 0.33 0.53 2.12 0.30 0.47 3.76 set2 y1 y2 y3 0.32 0.47 5.18 0.23 0.26 1.06 0.42 0.65 3.88 0.28 0.38 3.76 0.35 0.47 1.41 The "pairs" function (such as pairs(~x1+x2+x3 data=set1, main="Simple Scatterplot Matrix") ) is

Dear all,   I have data from the following experimental design and trying to fit a mixed model with lme function according to following steps but struggling. Any help is deeply appreciated.   1) Experimental design: I have 40 plants each of which has 4 clones. Each clone planted to one of 4 blocks. Phenotypes were collected from each clone for 3 consecutive years. I have genotypes of plants. I

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Dear All,   I need to create eps file which is the required figure format  of the journal that I want to submit a paper. I am able to create files in pdf or wmf format but not in eps format. Is there a way to convert pdf or wmf to eps? or alternatively, how can I create an eps file in R?   Any help is deeply appreciated.   Kind Regards   Seyit Ali

Dear R users,   I need to draw a barplot with 2 Y axis. I have 3 days each of wich having 2 groups (and error bar for each of them). The height of the 3rd day is too tall compared to others. That's why I have to use a second Y axis for that. I am using  "barplot2" function of "gplots" library (to be able to add error bars as well). Data and  codes currently I am using is

Dear all, Can anybody tell me how to export a 3d figure made with the plot3d function? I'm careless about whether it's still interactive or not in another format, as long I can get it out of R. Thanks! Alejandro Gonz?lez Departamento de Biodiversidad y Conservaci?n Real Jard?n Bot?nico Consejo Superior de Investigaciones Cient?ficas Claudio Moyano, 1 28014 Madrid, Spain Tel +0034

Dear R users, I have recently started using R. I need to execute a FORTRAN file within R. Does it allow to call executable (or FORTRAN code) file within R ? Thank you very much in advance. Kind Regards Seyit Ali KAYIS ___________________________________________________________________________ THE FOLLOWING WARNINGS ATTACH TO THIS COMMUNICATION This material is intended

I've written a recursive function to extract the members of an individual cluster within a hierarchical clustering. I have something that works, but the return value has a list structure I don't like. I know how to work around with 'unlist()' but I suspect the function could be fixed. Can anyone show me show? Thanks, Jenny Bryan Demo of my problem -- (Note: although

Hi All, Thanks for you help, I have loaded the library MASS to call the mca. But when I want to do the mca, there is another problem, for example -------- -------- > leaf <- read.table("C:/Documents and Settings/wxh-c/×ÀÃæ/1.txt", + col.names=c("size","texture"),header=TRUE) > leaf size texture 1 3 3 2 2 2 3 3 2 4 3

Dear R People, I'm working on a plot function to produce the graph shown below. One of the features my supervisor does not like is that the labels in the Y- axix are shown vertically. Is there a way to change that to horizontally ? This is the axix() function I used : axis(2,at=seq(nstrat),labels=snames) The labels (snames) are: SEV1:HU:C, SEV1:MU:C, SEV1:MU:L, SEV1:RT:C and SEV1:RT:L,

Hi all, how do I change the magnification of xaxis annotation? I need a smaller axis text size in some of my plots. I tried cex.axix=0.5 in plot(), but this doesn't work. Thanks, Sven -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

Core developers, I couldn't find any simple way to send a vector of colors to apply to each terminal in plot.dendrogram() or plot.hclust()---I asked R-help about it a few weeks ago and didn't get any response---so I hacked that functionality into the plot.dendrgram code (see below for hacked function plus examples).... Is there any chance this functionality could be added to the

Dear R users, I used plot() and mtext() functions to draw a plot. The numbers: 0,20,35, 40,60,80,100 were in the vertical direction. I'd like to transfer them into the horizontal direction. plot(0,0,xaxt="n",type="n", ylim=c(0,100)) mtext("35",side=2,at=35) Any suggestion? Thanks. Rebecca [[alternative HTML version deleted]]

Hello to all, I still have this doubt. I'd like to colour the different labels of my dendrogram each one with a different colour. How can I do? I guess I could do using *edgetext* and then *t.col* or* lab.col* but I don't know how to add edgetext to my dendrogram. Can you help me please? Example: require(graphics); require(utils) hc <- hclust(dist(USArrests), "ave") (dend1

Hi, i still try to sieve system. ok first our deliver command procmail. our user accounts stored in openldap, mail files are in Maildir folders in 15-lda.conf recommented protocol lda { # Space separated list of plugins to load (default is global mail_plugins). mail_plugins = $mail_plugins sieve log_path = info_log_path = } after that, in master.cf i added dovecot unix -

Hi I have a distance matrix which is computed by user defined method. I would like to plot the dendrogram. I would like to use different color and want the leaves laying down bottom. The script like this. I am not familiar with R. I followed the example shown in http://stat.ethz.ch/R-manual/R-devel/library/stats/html/dendrogram.html dist.obj <- as.dist(matrix.distance) hc.obj <-

I have the following list of observations of calendar time: [1] 03-Nov-1997 09-Oct-1991 27-Aug-1992 01-Jul-1994 19-Jan-1990 12-Nov-1993 [7] 08-Oct-1993 10-Nov-1982 08-Dec-1986 23-Dec-1987 02-Aug-1995 20-Oct-1998 [13] 29-Apr-1991 16-Mar-1994 20-May-1991 28-Dec-1987 14-Jul-1999 27-Nov-1998 [19] 09-Sep-1999 26-Aug-1999 20-Jun-1997 05-May-1995 26-Mar-1998 15-Aug-1994 [25] 24-Jun-1996 02-Oct-1996

Dear R helpers Suppose I am plotting a simple scatter plot where no of paired observations (x,y) are say 100. month          length 1                   10 2                   12 3                   17 4                   21 5                   13 .......................... .......................... .......................... 100              16 when i run the command plot(month, length)

Hi, I am trying to use dovecot as lda. I have put this line in my .qmail-default file: #|/var/qmail/bin/preline -f /usr/local/libexec/dovecot/dovecot-lda -d $EXT@$USER It is working correct with real addresses but couldn't find forwarding addresses. This is my /usr/local/etc/dovecot-sql.conf: driver = mysql connect = host=localhost user=vpopmailuser password=vpopmailpassword

Hello to all, I'd like to colour the different labels of my dendrogram. How can I do? I guess I could to using *edgetext* and then* t.col* or *lab.col* but I don't know how to add edgetext to my dendrogram. Can you help me please? Example: require(graphics); require(utils) hc <- hclust(dist(USArrests), "ave") plot(dend1) labels (USArrests) [[1]] # to know how many cities