similar to: Changing CRAN package compile option defaults?

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file 'MCMCglmm_2.05/DESCRIPTION'

Hello, I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1. Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local. When attempting to install ncdf4 it is failing with: ** testing if installed package can be loaded Error in

You normally see these errors when compiling on a vm that has very little memory. Hadley On Tue, Apr 19, 2016 at 2:47 PM, Ben Tupper <btupper at bigelow.org> wrote: > Hello, > > I am getting a fresh CentOS 6.7 machine set up with all of the goodies for R 3.2.3, including dplyr package. I am unable to successfully install it. Below I show the failed installation using

Hello, I am getting a fresh CentOS 6.7 machine set up with all of the goodies for R 3.2.3, including dplyr package. I am unable to successfully install it. Below I show the failed installation using utils::install.packages() and then again using devtools::install_github(). Each yields an error similar to the other but not quite exactly the same - the error messages sail right over my head. I

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

Dear List, Having had my appetite sufficiently whetted by Prof. Ripley's email about the new graphics capabilities in Unixes, I wanted to try them out. I updated to svn r44608, configured with the following options: R is now configured for x86_64-unknown-linux-gnu Source directory: .. Installation directory: /usr/local C compiler: gcc -O3 -g -std=gnu99

Hi Ovirt node image build problem? Node image build my system OS Fedora core 14. I am have a question about installation process of oVirt project. Install DOC : https://fedorahosted.org/ovirt/wiki/Build But node-image build error? [root at Ovirt-T node]# ./autogen.sh I am going to run ./configure with no arguments - if you wish to pass any to it, please specify them on the

Dear all, I'm having issues with the installation of the ncdf package. It returns a non-zero exit status. Can anyone suggest what I should do next? FYI, I do not have problems installing other packages. Thanks. Muhammad * installing *source* package ?ncdf? ... checking for nc-config... /usr/local/bin/nc-config configure: creating ./config.status config.status: creating src/Makevars **

Hi all, I compiled 64-bit R on an Apple Mac G5 running OS X, but it failed make check. Simon Urbanek suggested I post results to R-devel. > On Nov 6, 2007, at 10:23 PM, Steven McKinney wrote: > > > Hi Simon, > > > > Would you be able to give more guidance on how to compile 64-bit > > libiconv for Tiger, > > You can get the sources from Apple and compile

No, that's not it. The error is that you don't have the g++ binary installed. Undo that change and yum install gcc-c++. On Apr 14, 2015 8:31 AM, Mark Leeds <markleeds2 at gmail.com> wrote: > > Hi: I'm on fedora 19 ( I know. I'm behind : ) and I'm trying to install the > httpuv library > which depends on Rcpp. When I try to install it with dependencies =

Hi, yesterday lib-sql got driver-sqlpool with some changes in Makefile.am, but these changes in makefile works only for --with-sql=yes. When --with-sql=plugin is used build fails with: libtool --tag=CC --mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 - m64 -mtune=generic -Wall -W -Wmissing-prototypes

Hi: I'm on fedora 19 ( I know. I'm behind : ) and I'm trying to install the httpuv library which depends on Rcpp. When I try to install it with dependencies = TRUE, I get the following error. ( I'm only showing the end of the install messages. Things go okay for a good while ). INSTALLATION MESSAGES #================================================================ make[1]:

Dear all, As of the current R alpha release, I'm seeing timezone-related warnings on installing any package (including the recommended ones), which I haven't seen before. For example, [~/Documents/Source/R-alpha]$ bin/R CMD INSTALL ~/git/tractor/lib/reportr * installing to library '/Users/jon/Documents/Source/R-alpha/library' * installing *source* package 'reportr' ...

On Mon, Oct 9, 2017 at 4:42 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 10/09/2017 11:16 AM, Paul Smith wrote: >> >> I am trying to install >> >> igraph package >> >> but getting the following error: >> >> ------------------ >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1 >> ERROR:

Dear R users I am attempting to add lncdf_1.6.tar.gz libraries within R, and have failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux 2.6.293.-60.fc10.x86_64. I've run R CMD INSTALL ncdf_1.6.tar.gz and I have the following --------------- * Installing to library '/usr/lib64/R/library' * Installing *source* package 'ncdf' ... checking for gcc... gcc

Hello, I encountered errors when building rpm on fedora33: Versions: libvirt: v6.9.0-rc2 gcc-10.2.1-5.fc33.x86_64 meson-0.55.3-1.fc33.noarch ninja-build-1.10.1-2.fc33.x86_64 binutils-2.35-11.fc33.x86_64 Steps: 1. Archive libvirt source code to ~/rpmbuild/SOURCES/libvirt-6.9.0.tar.xz 2. Copy libvirt.spec.in to ~/rpmbuild/SPECS/libvirt.spec. Then `sed -i s/@VERSION@/6.9.0/g

Dear R People: I'm installing R 2-.15.1 on a Windows 32 bit machine from source. I'm getting a strange error about init.win (please see below) Does this look familiar to anyone, please? Thanks, Erin Microsoft Windows [Version 6.1.7600] Copyright (c) 2009 Microsoft Corporation. All rights reserved. c:\R\R-2.15.1\src\gnuwin32>make all recommended make all recommended make[1]:

Hello all, I'm trying to build R 32bit from source in a Windows 64 machine. I have followed the steps in "R Installation and Adiministration" ( http://cran.r-project.org/doc/manuals/R-admin.html#Getting-the-source-files) or at least I think I did everything described. I am not sure if I have installed the libjpeg, libtiff and libpng files though. I have upzipped them in the