similar to: filled.contour as image

Hi all, I've been having trouble reading in distance matrices (values in lower triangle only) that have been created by other programs. They load with NA values in the upper triangle. Is there an option to read the matrices properly? Thanks, Muri ____________________________________________________________________________________ that gives answers, not web links.

Hi everyone, I have a matrix that contains 1000 replicates of a sample of a list of values. I want to group each row (row=replicate) into my defined bin ranges and then calculate the mean and stdev for each of the bin ranges (so I will have 1000 rows but ncol=number of bin ranges). I don't know how to group rows in a matrix matrix according to another vector (which is what I think I need to

Hi everyone, I have a problem with running a glm using a subset of my data. Whenever I choose a subset, in the summary the factors arent shown (as if the variable was a continuous variable). If I dont use subsets then all the factors are shown. I have copied the output from summary for both cases. Thanks for the help, Muri > model<-glm(log(cpue)~year,family=gaussian) Call: glm(formula =

Hi all, Does anybody know how to add contour lines to a filled contour plot? I want to draw a single contour around values that are above a certain level (e.g., significant). The problem I'm having is that since the filled.contour command actually draws two plots (data and the key), adding contour lines paints them over both plots. Any suggestions? Thanks, Andy #~~~~~~~~~~~~~~~~~~~

Hi. I'm a big user of level plots. Because filled.contour() didn't do exactly what I wanted, I hacked at it a bit to add these options: (*) Even spacing in the key, even if the contours are not evenly spaced. (*) Horizontal key (*) options to not use layout() and to plot only the level plot _or_ only the key. This means you can use layout yourself to (e.g.) have several

I'm trying to make a set of contour plots of bivariate kernel density estimates, showing three such plots overlaid, similar to this plot http://euclid.psych.yorku.ca/SCS/Private/Test/ridge-boot2.pdf except that I would like to have the contours *filled* (using transparent colors). To make this reproducible, I've saved the results of KernSmooth::bkde2D() in the following file:

I was trying to add points to filled.contour plots, but the points(...) function apparently uses a different coordinate system than the filled.contour(...) function; it appears that points(...) paints points where they would be if the contours were stretched over the whole plotting frame including the legend bar. Am I missing something or is it a "misalignment" in the code? BTW, I have

hello everyone, I was wondering if anybody can help me solve 2 problems related to the function filled.contour. I am entering the following R command: filled.contour(xx,yy,P1, nlevels=20,color=cm.colors, plot.axes={ contour(xx,yy,P1,add=T,col="grey", nlevels=20, drawlabels=F) axis(1,1:length(xx),labels=xlabels)

Dear R-users, I haven't found a way in the searchable archive to overplot a contour (lines) over a surface. I have a (n,m) matrix that represents sea surface temperature that I have plotted using image.plot(), filled.contour() or image(). I would like to overplot this image with some contour lines of mixed layer depth values(same size matrix). How can I do this? Any help is appreciated,

Dear R-helpers, I'm plotting geophysical data in the form of contours using "filled.contour". The display would be much more effective if the areas with negative values could be color coded by -- say -- "cold colors" in the range of blue to green, and conversely the areas with positive values got plotted with "warm colors", from yellow to red. Right now if I use

The following plot is a first approximation to what I need: *********************************** mu1 <- 0 mu2 <- 5 s <- 1 x <- seq(-2.5, 7.5, length = 41) y <- seq(-2.5, 2.5, length = 41) f <- function(x,y){ term1 <- 1/(2*pi*sqrt(s*s)) term2 <- -1/2 term3 <- (x - mu1)^2/s term4 <- (y - mu1)^2/s term5 <- (x - mu2)^2/s term1*(.5 * exp(term2*(term3 + term4)) + .5 *

Hi, I'm trying to do a filled.contour plot where some points are labelled as NA. How do I could plot this kind of graphics, so NA points are coloured black, keeping the levels of remaining points. NA's values represent land points (meaningless), and what I want to plot is the levels of a variable over the sea. x<-seq(length=21, from=-10, by=.25) y<-seq(length=8, from=36,

Is it possible to create a contour plot with the isolines labeled. I know you can do this with Matlab. Argh! I tried creating a filled contour plot, then using par(new=T), followed by overlaying the contour plot on top. However, the placement of the filled contour plot and the contour plot do not align correctly. Any suggestions would be appreciated. Thanks, Jon -- View this message in

Dear R-help members, I am trying to plot annotate a filled contours plot (with filled.contour) with a grid of points. I have read ways of annotating it with individual points but not with grids in another matrix. Any ideas? Thank you very much. Dario ___________________________________ Dario Martin-Benito CIFOR-INIA Dpto. Sistemas y Recursos

Greetings I am currently using R to produce contour plots of a given variable via "contour", together with a hacked* version of filled.contour to shade several regions of the plot. As the regions overlap, I am using colors with alpha-channel values of ~0.1 together with the pdf device (version="1.4"). The transparency works well. However, a white grid is superimposed over

Dear R users, I have a 51 by 51 matrix of p-values (named as pvalue_MA). I want to present graphically this matrix in a plot (filled contour plot) where both axes represent probabilities. I have also added a grid in this plot. I want to highlight in white the cells of the grid that represent p-values smaller than the (common) significance threshold, 0.05. The code from this plot is colored in

Hello, I'd like to remove color bar from "filled.contour" plot. Is it possible and how? I also want to overlay "contour" plot on filled.contour but due to scaling of the "filled.contour" to account for the color bar, aspect ratio for "contour" is different from "filled.contour". Can this problem be solved? Thanks, Mark

Dear all, I wonder about what could actually be possible with the function "contour": 1/ - the definition of contour lines is most often meaningless when the contours are drawn in areas where no real data points exist. It can however happen that irregular distributions lead to more or less irregular clouds of data points. Interpolations (eg: loess regression, GLM, etc...) are however

Hola a todos: Yo pensaba que la diferencia entre contour y filled.contour radicaba, simplemente, en que la segunda pintaba con colores los espacios entre las curvas de nivel, pero haciendo lo de abajo aparecen diferencias require(gplots) celdas <- 5 m <- matrix(10,celdas,celdas) m[3,3] <- 20 m[2,2] <- 20 m[1,] <- m[celdas,] <- m[,celdas] <- m[,1] <- 20 image(m,asp=1)

Dear All, I have a question on overlaying a filled.contour (e.g. on soil properties data) and contour (by elevation) in one graph. Both have the same z matrix dimension. I'm able to overlay both graph, but the plots dimension did not overlap well on the same plots. How can I have both filled.contour and contour on the same graph? The commands that I have written are as follows: