similar to: [BioC] BioC 2.3 standard installation

I'm having trouble with R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=~/lam lam is is installed locally. lamboot -d (or lamboot-d and also recon) works. make -k check from the lamtest suite passes all tests. Is this is problem with the -fPIC compiler as in the message? Should it be modified in the Makefile? Any help or comments are appreciated, thanks. * Installing to library

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

Dear all, I have used the Rmpi package many times before however this time I've installed it as I always do with openMPI tar.gz file direct from the website. I'm installing on my ubuntu 8.10. Linux 2.6.27-11-generic #1 SMP Thu Jan 29 19:28:32 UTC 2009 x86_64 GNU/Linux All i get is: > library(Rmpi) Segmentation fault :~$ Which dumps me back into the shell, and doens't give me much

I try to install Rmpi as root with install.packages("Rmpi"). It fails with: ... checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO C89... none needed I am here /usr and it is OpenMPI Trying to find mpi.h ... Found in /usr/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib checking for openpty in -lutil... yes checking for main in -lpthread...

Hello, We have recently added a 64-bit 2 x Dual-Core Athlon server running Red Hat Enterprise Linux AS release 3 to allow for processing of large data sets (>4GB) in R. To integrate this server into our Linux cluster, I have been trying (unsuccessfully) to use Rmpi/lam-mpi to parallel process some of our scripts. While I have successfully compiled R 2.4.0 and lam-mpi 7.1.2 on this server using

Dear R People: I'm trying to install Rmpi (latest version) on Ubuntu. However, I'm getting the following error: erin at erin-Y480:~$ R R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are

Hello R-help! I am a systems administrator for the University of Southern California. I take care of it's general-purpose research cluster, and have recently been asked to provide access to a parallelized R platform. I do not have any previous experience using R, and have only ever had to do anything more then 'yum -y install R'. We have a myrinet MPI network, and use mpich1 as our

Hi guys, I've spent a few days trying to install Rmpi with no luck. I originally tried using mpich, moved on to mpich2, and then to openmpi. I've gotten the furthest with openmpi, though am still running into this problem and can't figure it out. Can someone help!? Thanks so much in advanced. I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the error at the

Updating the fink flac to 1.0.4, it won't compile because finds the headers of the previous version in /sw/include, because the CPPFLAGS/CFLAGS are being put before the local includes: (configure with ./configure --prefix=/sw --mandir=/sw/share/man ) gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"

Xiph.Org announces the release of libao-1.0.0, libvorbis-1.3.1 and vorbis-tools-1.4.0. This is a coordinated update of the audio libraries and tools to deploy improved surround-sound support across the libraries and toolchain. libao improvements: - AO returned to active development - Added surround channel mapping API and capability - Updated all drivers on modern installs - New config file

Xiph.Org announces the release of libao-1.0.0, libvorbis-1.3.1 and vorbis-tools-1.4.0. This is a coordinated update of the audio libraries and tools to deploy improved surround-sound support across the libraries and toolchain. libao improvements: - AO returned to active development - Added surround channel mapping API and capability - Updated all drivers on modern installs - New config file

Hi, I was trying to install the package Rmpi on a hpc cluster running SGE. The command, and the sessionInfo() is as follows: =========================================== > install.packages("Rmpi",dependencies=TRUE) also installing the dependency ‘rsprng’ trying URL ' http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz' Content type

Dear R Gurus: Is there a problem with Rmpi on x86 with SUSE 10.1, please? I've tried everything and it still won't load. Has anyone else dealt with this please? Thanks, Edna Bell

Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error messages to contribute (see below). I'm not sure what the actual error is and what the @gprel relocation message is about. Any help

Hi, I just read the thread about making 3dnow optimisations default and thought I would test it as I have an AMD here. Unfortunately I can not even compile with default (no 3dnow) options. ./configure goes fine including this part: checking whether to build static libraries... yes checking whether -lc should be explicitly linked in... no creating libtool checking for g++... no checking for

It's not really documented, but when you compile with --enable-sse, you need to add -march=pentium3 to the compile switches. That's actually a gcc requirement. Jean-Marc Le mer 21/01/2004 à 04:22, war a écrit : > gcc-3.2.2 + slack 9 + p4 2.6ghz (has sse/2) > > ./configure --prefix=/app/speex-1.1.4 --enable-shared --enable-sse > --with-ogg-dir=/app/libogg-1.1 >

When compiling Speex 1.1.4 with GCC 3.3.2, the option -msse must be added to the CFLAGS in libspeex/Makefile. GCC 3.1.1 added a new option "-msse" (see http://gcc.gnu.org/gcc-3.1/changes.html , specifically under "New Targets and Target Specific Improvements") to enable SSE instructions within the compiler's output (for appropriate architectures). Compiling speex on

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

Jake wrote: >$ ./autogen.sh >aclocal: configure.in: 142: macro `AM_PROG_LIBTOOL' not found in library >aclocal: configure.in: 255: macro `AM_ICONV' not found in library >aclocal: configure.in: 256: macro `AM_LANGINFO_CODESET' not found in >library I can compile now that I've installed libtool-1.5.6 and gettext-0.14.1. :-) I did need to tweak autogen.sh to use

On Fri, 2003-04-18 at 20:01, Travis Pinney wrote: > I tried the icecast-2.0-alpha-2-20030416.tar.gz file. I am using OpenBSD > 3.2 and it configured ok but it had a problem linking libxslt. I have it > installed > from the ports. Not sure what it is but I am going to check it out. > > Here is the last part of the log. > > checking for xsltParseStylesheetFile... no >