similar to: Standard deviation for rows

Hi everyone, I have dataset which I make a sample of it couple of times and each time I get the mean and standard deviation of each row for each sample. I have a function for that, which takes the name of the file and number of times to sample and then returns the mean and standard deviation for each row in each sample. Sample=function(name, n){

Hi there, I have a the following function which takes a name(fname), total number of rows (Total), number of times to make a sample(nSample), number of records/rows to be included in each sample(nPatient). then it generates required samples and calculates the mean and standard deviation of the columns for each sample and finally in calculates the grand mean and standard deviation. The problem

Hi, May be this helps: ?set.seed(24) ?mydata4<- as.data.frame(matrix(sample(1:100,10*38,replace=TRUE),ncol=38)) ?dim(mydata4) #[1] 10 38 ?library(matrixStats) res<-do.call(cbind,lapply(1:400, function(i) {permutation<-sample(mydata4); (rowMeans(permutation[,1:27])-rowMeans(permutation[,28:38]))/(rowSds(permutation[,1:27])+rowSds(permutation[,28:38]))} )) ?dim(res) #[1]? 10 400 A.K.

Hi, I am analysing gene expression data using the heatmap.2 function in R and I was wondering what is the formula of the "raw z-score" bar which shows the colors for each pixel. According to that post: https://mailman.stat.ethz.ch/pipermail/r-help/2006-September/113598.html, it is the (actual value - mean of the group) / standard deviation. But, mean of which group? Mean of the gene

Hi everyone, I have dataset which I take random samples of it 5 times. each time I get the mean for rows for each sample. at the end I need to calculate the Average of all means for each sample and each row. to clear it up I give an example: say this is my dataset. X8 X9X10X12 X13 X14 X15 X16X17X18X19 X20 X21 X22 s1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 s2 0 0 0

Hi everyone, > does any one knows how can I calculate mean for different samples > i.e. I have a data like this: > > s1 s2 s3 s4 > 1 0 0 0 1 > 2 1 0 1 0 > 3 0 0 0 0 > 4 0 0 0 0 > 5 0 1 0 1 > 6 1 0 0 0 > 7 0 0 0 0 > 8 0 0 0 0 > 9 0 0 0 0 > 10 0 0 0 1 > > I need to make 5 different sample with 5

Hi people, If there is a fn "colMeans" why isn't there a "colSDs" etc Thanks, Phil. -- Philip Rhoades Pricom Pty Limited (ACN 003 252 275) GPO Box 3411 Sydney NSW 2001 Australia Mobile: +61:0411-185-652 Fax: +61:2:8923-5363 E-mail: pri at chu.com.au -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read

Hi everyone, I have a question about functions. I have two functions: Sampling=function(fname,Total,nSample,nPatient){......return(list(Gmean,Gsd))} Power=function(alfa,m1,m2,s1,s2,n1,n2){....return(powe)} I want to use "Gmean" and "Gsd" which are the returned values from "Sampling" function, in "Power" function. i.e. when I call "power" I want

Does anyone know if it is possible to add a dictionary file of known words that becomes part of the *built* package to tell 'R CMD check --as-cran' not to report these words as misspelled. I want this dictionary to come with the *.tar.gz such that it will be available regardless where the package is checked. For instance, currently I get: * using log directory

Hi everyone, I have a dataset(named "Mydata") which includes 4 different variables named; s1,s2,s3,s4 .Each variable(symptom) has 14 patients. I need to use random sampling to make, 5 different samples from my data with 5 patients in each sample. i.e. using all 4 variables I need to make 5 different samples by changing patients(with 5 patients in each sample). X8 X9 X10 X102 X110

Hi guys, I need to insert a row to a matrix in a for loop. I have matrix named "Avg" which is a 5x4 matrix of zeros. I have a file named "A"(4 rows,14 columns) which I make a sample of it 5 times. each time I get the mean for each column and put the result in the "Avg" matrix. this is my code: Avg=matrix(0,5,4) > > for(i in 1:5){ + res=(A[sample(nrow(A),

Hi there, I am trying to have a connectivity graph (two plots at once) in R: this is an example: x1=sin((0:100)*2*pi/100) y1=cos((0:100)*2*pi/100) plot(x1,y1) will draw a circle and x2=c(1,9,3,4,8,4,2,0) y2=c(3,6,8,2,4,1,9,6) plot(x2,y2,type="b") will draw a graph with corresponding x's and y's and connects the point. I want to have a circle with these points connected to

Hi guys, I am truing to draw a circle and choose 10 points on the circle and put a number from 1 to 10 above each point. I don't have a problem with drawing a circle and choosing 10 points. my problem is with numbering . is it even possible to put a number above each chosen point? if so any idea how to do it? ps: the circle has red dots and the selected points are in black. here is my code:

> n=10;t=3 > d<-cbind(id=rep(1:n,each=t),y=rnorm(n*t),x=rnorm(n*t),z=rnorm(n*t)) > head(d) id y x z [1,] 1 -2.1725379 0.07629954 -0.3985258 [2,] 1 -1.2383038 -2.49667038 0.6966127 [3,] 1 -1.2642401 -0.50613307 0.4895856 [4,] 2 0.2171246 0.86711864 -0.6660036 [5,] 2 2.2765760 -0.48547142 -1.4496664 [6,] 2 0.5985345 -1.06427035 2.1761071

Hi R-helpers, I have been struggling with calculating row and column statistics, e.g. standard deviation. I know that > datac$Mean<-rowMeans(datac,na.rm=TRUE) will give me row means. I have tried to replicate those row means with the apply function: > datac$Mean2<-apply(datac,2,mean) so that I can replace the function argument with "sd" (instead of mean) to get standard

Hi, I have problem getting the standard deviation from the manova output. I have used the manova function: myfit <- manova(cbind(y1, y2) ~ x1 + x2 + x3, data=mydata) . I tried to get the predicted values and their standard deviation by using: predict(myfit, type="response", se.fit=TRUE) But the problem is that I don't get the standard deviation values, I only

Hi, Could anyone give suggestions how to plot a scatter plot with 1 standard deviation for each point. To make it clearer, here is a simple example: the scatterplot is plot(X, Y), but I want to add 1 standard deviation according to the value of Z for each Y. X Y Z 1 3.5 1.1 . . . . . . . . . Thanks a lot in advance. FD [[alternative HTML

I'm trying to provide different parameters to the integrate function for various probability functions. I'm using dnorm as the simplest example here. For instance integrate(dnorm, -1.96, 1.96) produces the correct answer for a normal distribution with mean 0 and standard deviation 1. I've tried two ways to use mean=2.0 and standard deviation 1, but with no luck. The examples follow.

Dear R users, This is more a statistical question rather than an R question. I'd appreciate it if you can give me some suggestions. I have a sample of a time series (sample size 500, fat tail in density). I am trying to calculate the Standard error of standard deviation of a sub-block-sample (sample size 250). I take 100 this kind of sub-block-sample, randomly. For these 100 subsamples, I

Hi, I have two (different types of) measurements, say X and Y, resulting from the same set of experiments. So X and Y are paired: (x_1, y_1), (x_2, y_2), ... I am trying to calculate the standard deviation of Y with respect to X. In other words, in terms of the scatter plot of X and Y, I would like to divide it into bins along the X-axis and for each bin calculate the standard deviation along