similar to: Running anova on different datasets

Displaying 20 results from an estimated 40000 matches similar to: "Running anova on different datasets"

2008 Oct 16
2
Saving results of Kruskal Walis test
Hello, I am running Kruskal-Walis test in R. When I try to save results using write.table it gives me the following error : Error in as.data.frame.default(x[[i]], optional = TRUE, stringsAsFactors = stringsAsFactors) : cannot coerce class "htest" into a data.frame The overall code is as follows : >data_file = read.table("~/DATA.dir/data_file.txt", header=T)
2007 Mar 14
1
How to transform matrices to ANOVA input datasets?
Hello, R experts, I have a list called dataHP which has 30 elements (m1, m2, ..., m30). Each element is a 7x6 matrix holding yield data from two factors experimental design, with treatment in column, position in row. For instance, the element 20 is: dataHP[[20]] col1 col2 col3 trt1 trt2 trt3 [1,] 22.0 20.3 29.7 63.3 78.5 76.4 [2,]
2004 May 07
1
contrasts in a type III anova
Hello, I use a type III anova ("car" package) to analyse an unbalanced data design. I have two factors and I would have the effect of the interaction. I read that the result could be strongly influenced by the contrasts. I am really not an expert and I am not sure to understand indeed about what it is... Consequently, I failed to properly used the fit.contrast function (gregmisc
2006 Oct 24
2
Installing stats4 package
Hi, I wantto use 'mle' function in R on linux. As I see its been integrated into the stats4 package. Am I correct ? If yes, Can anyone suggest how to install the stats4 package to be able to run 'mle' function in R on linux ? Otherwise how to sort out this problem ? Thanks Himanshu [[alternative HTML version deleted]]
2009 Apr 15
2
AICs from lmer different with summary and anova
Dear R Helpers, I have noticed that when I use lmer to analyse data, the summary function gives different values for the AIC, BIC and log-likelihood compared with the anova function. Here is a sample program #make some data set.seed(1); datx=data.frame(array(runif(720),c(240,3),dimnames=list(NULL,c('x1','x2','y' )))) id=rep(1:120,2); datx=cbind(id,datx) #give x1 a
2006 Apr 07
2
Dealing with missing values in HeatMap generation
Hi, I want to generate a heatmap for my data (in a matrix). However, the data has some missing values (represented as blank). I get the following errors (with the blanks and with blanks replaced by NA and including the option rm.na = TURE): > filename = "input_heatmap.txt" > g <- as.matrix(filedata) > fg <- rainbow(nrow(g), start=0, end=.3) > gg <-
2006 Jul 28
0
tests performed by anova
Dear R-helpers, In the case of two categorical factors, say a and b, once I have fixed the constrasts, the model matrix is set according to these contrasts with "lm", and the t-tests for the significance of the parameters provided by "summary" indeed concern the comparison of the model with each submodel obtained by removing the corresponding column of the model matrix.
2008 May 07
0
solution to differences in sequential and marginal ANOVA using a mixed model
Yesterday I posted the following question to the help list. Thanks to John Fox (copied below) who pointed out the solution. Original question: I have come across a result that I cannot explain, and am hopingthat someone else can provide an answer. A student fitted a mixed model usingthe lme function: out<- lme(fixed=Y~A+B+A:B, random=~1|Site). Y is a continuous variable while A and
2006 Jan 18
3
linear contrasts with anova
I have some doubts about the validity of my procedure to estimeate linear contrasts ina a factorial design. For sake of semplicity, let's imagine a one way ANOVA with three levels. I am interested to test the significance of the difference between the first and third level (called here contrast C1) and between the first and the seconda level (called here contrast C2). I used the following
2005 Oct 20
0
survreg anova: problem with indirect invocation
Dear R help, I've encountered a problem with survreg's anova(). I am currently writing general code to fit a variety of models using different fitting functions. Here's a simple example of what I'm trying to do: ---begin code--- # general function to analyse data analyse.data <- function(formula, FUN, data, ...) { fit <- FUN(formula, data=data, ...) anova(fit)
2012 Oct 07
1
Why do I get different results for type III anova using the drop1 or Anova command?
Dear experts, I just noticed that I get different results conducting type III anova using drop1 or the Anova command from the car package. I suppose I made a mistake and hope you can offer me some help. I have no idea where I got wrong and would be very grateful for explaination as R is new terrain for me. If I run the commands in line, they produce the same results. But if I run them in
2007 May 15
2
Anova Test
Hi, I am very new to R. I am trying to perform an Anova Test and see if it differs or not. Basically, i have 4 tests and 1 control. Tester Test1 Test2 Test3 Test4 Control 20 25 15 10 17 The inference is at alpha=0.05. they are all independent. I am trying to find if they differ or the same. > test1<-c(20) > test2<-c(25) > test3<-c(15) >
2008 Feb 24
2
mixed model nested ANOVA (part two)
First of all thank you for the responses. I appreciate the suggestions i have received thus far. Just to reiterate I am trying to analyze a data set that has been collected from a hierarchical sampling design. The model should be a mixed model nested ANOVA. The purpose of my study is to analyze the variability at each spatial scale in my design (random factors, variance components), and say
2011 Oct 06
1
anova.rq {quantreg) - Why do different level of nesting changes the P values?!
Hello dear R help members. I am trying to understand the anova.rq, and I am finding something which I can not explain (is it a bug?!): The example is for when we have 3 nested models. I run the anova once on the two models, and again on the three models. I expect that the p.value for the comparison of model 1 and model 2 would remain the same, whether or not I add a third model to be compared
2008 Jan 22
1
anova function to test the difference between two coefficients in nlme package
Dear Dr. Bates, and R-help, I've tried the anova function to test the difference between two coefficients, as shown on page 225 of your book "Mixed Effects Models in S and S-Plus (Statistics and Computing)". When I type: anova( fm2BW.lme, L = c(TimeDiet2 = 1, TimeDiet3 = -1) ) I got the following error message: Error: unexpected '=' in "anova( fm2BW.lme, L =
2004 Jun 28
1
unbalanced design for anova with low number of replicates
Hello, I'm wondering what's the best way to analyse an unbalanced design with a low number of replicates. I'm not a statistician, and I'm looking for some direction for this problem. I've a 2 factor design: Factor batch with 3 levels, and factor dose within each batch with 5 levels. Dose level 1 in batch one is replicated 4 times, level 3 is replicated only 2 times. all
2012 May 31
1
anova of lme objects (model1, model2) gives different results depending on order of models
Hello- I understand that it's convention, when comparing two models using the anova function anova(model1, model2), to put the more "complicated" (for want of a better word) model as the second model. However, I'm using lme in the nlme package and I've found that the order of the models actually gives opposite results. I'm not sure if this is supposed to be the case
2012 Jul 06
2
Anova Type II and Contrasts
the study design of the data I have to analyse is simple. There is 1 control group (CTRL) and 2 different treatment groups (TREAT_1 and TREAT_2). The data also includes 2 covariates COV1 and COV2. I have been asked to check if there is a linear or quadratic treatment effect in the data. I created a dummy data set to explain my situation: df1 <- data.frame( Observation =
2006 Mar 24
0
Trouble phrasing an R command that will run the model i need (ANOVA, nested)
Hi, I have been trying to find the appropriate R command to analyse my datasets according to a particular model. Unfortunately, my best attempts at doing so have so far not worked. I am wondering if anybody can help me to figure out what i've been doing wrong, and what i need to do in order to use R correctly? The model is an ANOVA with some crossed factors, interactions, and one nested
2009 Jul 08
2
Two-way ANOVA gives different results using anova(lm()) than doing it by hand
Hey! Could you please take a quick look at what I have done? Somehow I get wrong results using the anova(lm()) combination compared to doing a two way ANOVA by hand. Running: Data<-read.table("Data.txt"); g<-lm(ExM~S1*S2,Data); anova(g); Gives: Analysis of Variance Table Response: ExM Df Sum Sq Mean Sq F value Pr(>F) S1 1 4.3679