similar to: mean-plot (add residuals)

Hello to all users and wizards. I am regulary using 'boxplot' function or its analogue - 'bwplot' from the 'lattice' library. But they are, as far as I understand, totally flawed in functionality: they miss ability to select what they would draw 'in the middle' - median, mean. What the box means - standard error, 90% or something else. What the whiskers mean -

Dear R users, I have question concerning box plot and it's whiskers. As I understood from the description of the boxplot() function, if the range value is positive the plot whiskers extend out from the box to the most extreme data points defined by the values of the IQR times range (default 1.5). It suggests that the upper and lower plot whiskers should be more less the same length. What

In a Box and Whisker plot, I thought that when there are outliers both abov= e and below the whiskers, then the whiskers should both be the same length = (plus or minus 1.5 times the inter-quartile range). If you look at the plot for SilwoodWeather on p.155 of The R Book you will = see that for November (month =3D 11) the upper whisker is shorter than the = lower, while for other months with

dear R-help, i have looked carefully through the R-help archives for information on how to suppress whiskers in a bwplot. someone asked this question a while ago, but the answer he received is not available in the archives. but i did manage to get my hands on a panel function (called "my.panel") that is supposed to do this (the function is reproduced at the end of the email, below).

Hi All- I have 24 boxplots on one graph. I do not have the whiskers extending to the outliers, but I would like to label the maximum value of each outlier above the whiskers. I have the stats but am having trouble figuring out how to label the whiskers. Any suggestions would be great! sherri

Hello, I'd appreciate a suggestion on how to construct plots (barplots?) that use means on the Y axis instead of density/count. I'd also like to use groups and plot error or confidence interval bars on these graphs. I know this is a read the manual situation. I'd appreciate help with what to read, or your benevolence with some sample code. I've looked at lattice and gplots2, but

Hi, I'm having problems using the 'width' aesthetic attribute for the geom_errorbarh. This is the same problem reported earlier here, but I'll try to write the problem more clearly: http://www.mail-archive.com/r-help@r-project.org/msg62371.html The problem I'm having is that, the 'width' attribute is supposed to set the height of the endpoints of the whiskers, and

My box plot below is drawing its upper whisker all the way to the last point, instead of showing the point as an outlier. Am I misunderstanding, or is it a bug? Help(boxplot) states for the parameter ?range? that ?this determines how far the plot whiskers extend out from the box. If range is positive, the whiskers extend to the most extreme data point which is no more than range times the

Dear all, I am comparing: > summary(boxplot(c(1,2,3,4,5,6,7,8,50),range=1.5)) Length Class Mode stats 5 -none- numeric n 1 -none- numeric conf 2 -none- numeric out 1 -none- numeric ^^^^^ group 1 -none- numeric names 1 -none- character with: > summary(boxplot(c(1,2,3,4,5,6,7,8,50),range=0)) Length Class Mode stats 5 -none- numeric n

How are the lower/upper whiskers defined in the default version of boxplot {graphics}? I tried help(boxplot) and searching www.rseek.org, but I was unable to determine an absolute answer. I checked out the definition of boxplot according to Wikipedia (http://en.wikipedia.org/wiki/Box_plot), but it also had several approaches listed for how the whiskers could be determined, so I'm just

Hi all, I have 6 datasets(dataframes Assem_ContigsLen7 through all_ContigsLen12) containing 3 columns (contig_id, contig_length, read_count). Each dataset is composed of 3 types of contigs (assemblies of genomic fragments), 1- all Bacterial fragments, 2 - all Viral fragments, 3 - mixed fragments. I identified the type of contig through a merge with another table with just contig_id and

Hello! I need to make a plot with whispers that does the following. Reads in 50 files, each file containing 200 data points. A file looks like this: base100.log Send Receive 10.5 100.3 15.0 102.4 ... There are 100 lines, each with two data points. I need to read in the 50 files, and plot three lines The first line is the mean of the send column with whiskers indicating standard deviation

Try factor(vec2) in your bwplot() call. -----Original Message----- From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch]On Behalf Of Ernesto Jardim Sent: Friday, July 09, 2004 9:41 AM To: Mailing List R Subject: [R] Problem with bwplot Hi, I'm ploting some box-and-whisker plots with bwplot but I'm not getting any box-and-whiskers ... just dots.

Dear users, When I boxplot(), the lines of the whiskers are dashed. However, when I save in an svg file, the dashed lines of the whiskers are not dashed anymore. How can I have the dashed lines in the svg file? I don't have this problem with a ps file, but I cannot edit such file as easily as an svg file. That's why I'd like to stick to the svg format. Thanks in advance, Ivan df

Hi List, Just wondering where the documentation exists for the statistics which makeup the bwplot. I'm guessing that if R is like similar products that the graph is constructed as The median is the filled circle. The box surrounding the filled circle depicts the 25th and 75th quartile. The range of values is given by the dotted lines (?whiskers?) outside of each box, and possible

I have a data frame containing columns which are factors. I use this to make boxplots for the data, with one box per factor. I would now like to get at the data in the data frame which corresponds to the outliers. I have so far found the $out, which gives "the values of any data points which lie beyond the extremes of the whiskers", but I haven't found anything which will let me get

Hi, I have this variable; x <- c("test_01.log") and I want to extract the number (01) out of the variable. So that I get; > x [1] 1 I tried strsplit, but I don't know how to refer to the result. Can someone help me with that? [[alternative HTML version deleted]]

Hi, Is there a function which counts the frequencies of the occurence of a number within an interval? for example I have this vector: x <- c(1, 3, 1.2, 5, 5.9) and I want a vector that gives me the frequencies within an interval of 2, beginning at 0 (so the intervals are 0-2, 2-4, 4-6 and so on) so I get these frequencies: 2, 1, 2 Which functions do I have to use for this purpose?

Hi I am very new to R, I am attempting to produce a monthly boxplot with the following fish thermal telemetry data: ID Temp Date.Time Month.Year Month Week Shortdate 1 1734 4.4140 04/05/2010 11:56 05,2010 May 19 04/05/2010 2 1734 4.1002 04/05/2010 12:06 05,2010 May 19 04/05/2010 3 1734 3.9433 04/05/2010 12:09 05,2010 May 19 04/05/2010 4 1734 3.6295

Hi list members. I’ll try to plot the abundance means of nine transects as lines, with five points on each transect (A to I). I will also need to plot for each point, it’s standard deviation (once each point will have tree replicates) as whiskers. Another problem will be that all the points should exist for each transect, but we know that six of the nine transects will have blanks (A1, A2, A3, -,