similar to: echo Rprofile.site on startup

Hello, I have just installed R 2.7.0 and re-installed SciViews 0.8-9 and Tinn-R 1.19.4.7 and seem to have broken something along the way as follows. I double-click on my current .RData file in the Windoze explorer, R Console and Tinn-R load successfully (?). I can list objects in my working directory with ls() but, when I attempt to refresh any list in the R explorer tab of the Tools child

Hello Hadley, I am trying to reproduce the following with ggplot: a <- seq(0, 360, 5)*pi/180 ; a ac <- sin(a + (45*pi/180)) + 1 ; ac plot(a, ac, type='b', xaxt = "n") axis(1, at=seq(0,6,1), labels=round(seq(0,6,1)*180/pi),1) abline(v=c(45*pi/180, 225*pi/180)) I can get the basic plot: p <- qplot(a, ac, geom=c('point', 'line')) ;

Hello all-- I'm attempting to produce overlaid histograms with partially transparent columns. Whether this display will end up being useful, I can't say. But I do want to get it right. I've already got one solution (shown below), but I tried some other versions and had questions about my results. (Note: I'm using a quartz device, so transparency shows up correctly. You might

Dear List and Hadley, I would like to have a boxplot with ggplot2 and have the outlier values labelled with their "name" attribute. So I did > library(ggplot2) > dat=data.frame(num=rep(1,20), val=c(runif(18),3,3.5), name=letters[1:20]) > p=ggplot(dat, aes(y=val, x=num))+geom_boxplot(outlier.size=4, outlier.colour="green") >

Dear List, I am writing a paper in Hungarian, that I Sweave and than pdfLaTeX. Everything is fine, except for two accented letters in the graphs that behave strange, though on the screen and in eps exports they look perfect. The problem is that I need pdf graphs, since I would like to have a PDF after LaTeX-ing. For the example below I downloaded the following two font sets: 1. Latin Modern

Hello, I am unable to start an R session by double-clicking on an existing .RData file from the Windoze file explorer. A dialogue appears with the message "Fatal error: unable to restore saved data in .RData", and I notice in the R Console the last few lines are: "Loading required package: R2HTML NULL error in function () : unused argument(s) (1:43)" I tried starting

Hi, I have been using 'read.table' regularly to read tab-delimited text files with data. No problem, until now. Now I have a file that appeared to have read fine, and the data inside looks correct (structure etc), except I only had 15000+ rows out of the expected 24000. Using 'readLines' instead, and breaking up the data by tabs, gives me the expected result. I do not

Hi Everyone, I'd omitted the non-optional 'parameters' argument to selfStart. Making this change to SSbatch gives the same (successful) result from the two calls to nls. SSbatch<-selfStart( model=function(Batch, Coeffs) { Coeffs[Batch] } ,initial=function(mCall, data, LHS) { # Estimate coefficients as mean of each batch xy <- sortedXyData(mCall[["Batch"]],

Hi everyone, I thought that for a selfStart function, these two should be exactly equivalent > nls(Aform, DF) > nls(Aform, DF, start=getInitial(Aform, DF)) but in this example that is not the case in R (although it is in S-plus V6.2) ------------------------------ SSbatch<-selfStart( model=function(Batch, Coeffs) { Coeffs[Batch] } ,initial=function(mCall, data, LHS) { # Estimate

Hi All, I've hit a problem using nls. I think it may be a restriction in the applicability of nls and I may have found a fix, but I've been wrong before. This example is simplified to the essentials. My real application is much more complicated. Take a function of matrix 'x' with additional arguments: matrix 'aMat' whose values are _not_ to be determined by nls vector

useRs, Is there a way to schedule R scripts? I would like to run certain scripts three times a day. I'm running R on Windows XP. > sessionInfo() R version 2.6.0 (2007-10-03) i386-pc-mingw32 locale: LC_COLLATE=Finnish_Finland.1252;LC_CTYPE=Finnish_Finland.1252;LC_MONETARY=Finnish_Finland.1252;LC_NUMERIC=C;LC_TIME=Finnish_Finland.1252 attached base packages: [1] splines grid stats

Hello, Two lapply questions (system info and sample data below): 1) Why does the first form of command1 add the name of y _after_ the str() output rather than before as does the second (preferred) form? # command1 version1 invisible(lapply(ls(pattern='bn'), function(y) cat(y, "\n", str(get(y)), "\n") )) # command1 version2 (preferred output)

list(...) I can not get at the grid viewports in a ggplot2 plot. I know there is supposed to be a viewport called "panel_1_1" but downViewport() can't find it. Has the viewport been popped? I had a quick look at the functions involved (eg ggplot_plot) but there is no obvious problem there. > library(ggplot2) > qplot(1:10, 1:10) > current.viewport() viewport[ROOT] >

There seems to be a minor bug in barplot.default when used with log scale w= here one or more values is NA: dat <- matrix(1:25, 5) dat[2,3] <- NA barplot(dat, beside =3D T) #Plots and appropriate barplot with gaps for m= issing data barplot(dat, beside =3D T, log =3D "y") #Error in if (min(height + offset) <=3D 0) stop("log scale error: at least = one 'height +

Dear list, ?require says : "... |require| is designed for use inside other functions; it returns |FALSE| and gives a warning (rather than an error as |library()| does by default) if the package does not exist ..." However when I run the following code I don't get any TRUE / FALSE statements (but the warning only). Since I want to test from inside of a function if a given package

Folks: Problem: [<-.data,frame() is losing attributes under certain curcumstances shown below. I think this is a bug, at least in documentation, as I was unable to find explicit documentation of the behavior. Indeed, the only documentation I found told me attributes are preserved. Here is a detailed description: > df <- data.frame(a=1:3, b=letters[1:3]) > attr(df,"foo")

Hi, I'm trying to make sense of the image3d plots in misc3d. Unfortunately I can't find any authors on the help pages of the function to e-mail directly. In the following toy example, I'm puzzled as to why (1) the positions of the image plot on the axes include negative values when I think I've specified all to be 1:3 and (2) the logic that needs to be adhered to in order to

Dear list, I have encountered a special case for searching a linear regression where I'm not satisfied with the results obtained using the traditional least squares method (sometimes called OLS) for estimating/optimizing the residues to the regression line (see code below). Basically, a group of my x-y data are a bit off the diagonal line (in my case the diagonal represents the ideal or

Dear list, when running a mood.test() (part of package "stats") on slightly longer vectors (than the example from the help-page) we get the error-message shown below : once both vectors tested are of length 50 this error oocurs. Note, that this problem didn't occur with R-2.7.x (or even older versions). > x <- rnorm(50,10,5) > y <- rnorm(50,2,5) > >

Dear R ExpeRts, I'm having memory difficulties using mahalanobis distance to trying to cluster in R. I was wondering if anyone has done it with a matrix of 6525x17 (or something similar to that size). I have a matrix of 6525 genes and 17 samples. I have my R memory increased to the max and am still getting "cannot allocate vector of size" errors. My matrix "x" is