Displaying 20 results from an estimated 4000 matches similar to: "Installing Packages in Windows Vista -- YES I tried Run as Administrator"
2010 May 13
3
R cannot access the web?
Hi,
I had originally posted regarding an error when trying to install package -
GenABEL - it has now become clear that R is not able to connect to the net.
Below are a couple of things I've tried with the resulting errors
I am running R 2.6.2 on Linux e15 X86
How can I fix this? Thank you!
1) download.file("http://www.nytimes.com", destfile<-tempfile())
Error:
trying URL
2011 Jan 21
1
Reading gz compressed csv file - 'incomplete line found'
Hi all,
I am trying to download, decompress and read a csv file. My code:
myurl <-
"ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE24729/GSE24729_MitoNuclear_suppl_male_stats.csv.gz"
#
myfile <- "GSE24729_MitoNuclear_suppl_male_stats.csv.gz"
#
download.file(myurl, destfile=myfile, mode="w")
#
mycon <- gzcon(gzfile(myfile,
2008 Nov 24
1
Help reading installed packages in Vista
Hello.
After run, "installed.packages()" the following error arose:
Error in gzfile(file, mode) : cannot open the connection
In addition: Warning message:
In gzfile(file, mode) :
cannot open compressed file
2008 Jul 29
2
FW: Installing BRugs
A funny thing happened when I wanted a student of mine to install Brugs.
Using the InstallPackages in the windows version, firts gives an erro, but trying again works flawlessly.
R version is 2.7.0 on WinXP.
Any explanation?
Bendix Carstensen
______________________________________________
Bendix Carstensen
Senior Statistician
Steno Diabetes Center
Niels Steensens Vej 2-4
DK-2820 Gentofte
2011 Sep 01
1
rJava Installation Problems: 'cannot open compressed file 'rJava/DESCRIPTION', probable reason 'No such file or directory''
Good Morning,
I'm trying to install the rJava package on a local (work) machine and having
some trouble. The following occurred in an RGui session.
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
States.1252
[3] LC_MONETARY=English_United States.1252
LC_NUMERIC=C
[5]
2010 Jul 29
1
package xpose4 in Vista - Update
Dear R experts,
There seems to be a problem (please see the error messages below) with the
installation of the latest version of xpose4 (version 4.2.1) with the latest
R version.(2.11.1)... I didn't face such installation problems when using
version R.2.10.1
Would really appreciate your assistance in debugging installation of xpose
4..2.1 with R.2.11.1
Thanks again..
-Santosh
On Wed, Jul
2007 Jun 12
1
Problems with Vista, R 2.5.0 and function save
Hi everyone,
I want to make use of the save function but it did not work.
I'm using vista and R 2.5.0, winzip is installed too.
Here's the code (from example ?save):
> x <- runif(20)
> y <- list(a = 1, b = TRUE, c = "oops")
> save(x, y, file = "xy.Rdata")
Fehler in gzfile(file, "wb") : kann Verbindung nicht ?ffnen
Zus?tzlich:
2008 Feb 28
9
opening ..xfd file with wine
Just installed Wine and PureEdge so I can work with the US government's forms but am unable to open the form which is a file ending with .xfd extension. Can anyone shed some light on how to get PureEdge started?
Using Ubuntu Gutsy and FF
Any help is greatly appreciated.
Scotty
2008 Aug 05
2
qqline function doesn't plot
I have a data vector x. When I try
qqline(x)
I get the following error:
Error in int_abline(a = a, b = b, h = h, v = v, untf = untf, ...) :
plot.new has not been called yet
And a blank plot appears.
Can anybody help? What am I doing wrong?
Thanks,
Scotty
_________________________________________________________________
Contest
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2002 Dec 05
1
writing to gzfile: segmentation fault (PR#2347)
Full_Name: Vadim Ogranovich
Version: Version 1.6.0 (2002-10-01)
OS: Red Hat 7.1
Submission from: (NULL) (209.99.241.1)
The following sequence of commands crashes my R session. The first weirdness
happens after the second command that appears not to change the "foo.gz" file,
no error generated.
> con <- gzfile("foo.gz", open="w"); cat("goo\n",
2018 Mar 20
4
Fwd: Everything works except sending mail
Hi people,
Version of my beloved Dovecot installation:
2.2.27 (c0f36b0)
I moved from a OS X server to a Linux (Ubuntu) Headless server.
All fun and good to play around with. Love almost everything.
In the combination with Postfix and Dovecot I?m stuck to despair into
oblivion.
Everything works except I cannot send mail from my (OS X) Outlook client I
keep getting:
Connection to the
2006 Jan 07
2
Where is the stud.ci() function used in boot.ci()?
Hello!
I am trying to duplicate the studentized bootstrap confidence interval
calculations in boot.ci() without using boot.ci(). My w/o boot.ci()
calculations are close to boot.ci() using the same object from
implementation of boot(), but not quite the same (I think the differences
are due to how quantiles are computed for z*). Through examining the
boot.ci() code, I can see there is a call
2008 Mar 07
2
Problems installing packages using the inbuilt facility: "Error i n gzfile(file, "r") : unable to open connection"
Hi
I have been trawling the web, FAQs, and R manuals for help on the following issue, but have failed and was wondering if anyone has a solution to the following problem:
After having installed R 2.6.2 for Windows (binary), I tried to install various packages. Every time I try loading a package (any package) via the built-in menu, I run into the following error message.
>
2015 Nov 06
2
corrupt PACKAGES.gz?
Is it just me, or did a corrupt PACKAGES.gz file get installed in the
bin/windows/contrib/3.2 directory of CRAN mirrors recently? gzfile()
complains about it and Cygwin's gzip cannot decompress it. I tried the
following
repos <- "https://cran.rstudio.com"
v <- "3.2"
pkgs.gz <- paste(sep="/", repos, "bin/windows/contrib", v,
2018 May 10
2
readLines() behaves differently for gzfile connection
When I read a .gz file with readLines() in 3.4.3, it returns text (and a
warning). In 3.5.0, it gives a warning, but no text. Is this expected
behavior or a bug?
3.4.3:
> source_file = "1k_annotation.gz"
> readfile_con <- gzfile(source_file, "r")
> readLines(readfile_con, n = 5)
[1] "#chr\tpos\tref\talt\t
<truncated output here>
Warning message:
In
2005 Apr 19
2
building recommended packages on Windows
Hi,
I am building 2.1.0 (re-release version, if that matters) on a Windows XP
machine. Following the instructions 3.1 "Building from source" in
R-admin.html, I managed to get up to 3.1.6. But when I try to build the
recommended packages, I get
C:\hiro\codes\proj\R-2.1.0\src\gnuwin32>make recommended
--- Unpacking recommended packages
---- VR
make[1]: *** No rule to make target
2009 Oct 27
2
Why I get this error? Error in close.connection(f) : invalid connection
I don't understand why I can not close 'f'. This may be very simple,
but I don't see why. Could somebody let me know?
$ cat gzfile.csv
"","V1","V2","V3","V4","V5"
"1",1,5,9,13,17
"2",2,6,10,14,18
"3",3,7,11,15,19
"4",4,8,12,16,20
$ Rscript gzfile.R
> f =
2006 Jul 18
2
R-2.3.1.tar.gz does not contain VR bundle (PR#9084)
Full_Name: Jarno Tuimala
Version: 2.3.1
OS: Solaris / Linux
Submission from: (NULL) (193.166.2.98)
Today I downloaded the latest source code release R-2.3.1.tar.gz, and it seems
not to contain the VR bundle. After running ./configure I get the following
error message:
checking for recommended packages... ./src/library/Recommended/VR_*.tar.gz: No
such file or directory
no
configure: error: Some
2011 Sep 23
2
Issue with seek() on gzipped connections in R-devel
Dear all,
In R-devel (2011-09-23 r57050), I'm running into a serious problem
with seek()ing on connections opened with gzfile(). A warning is
generated and the file position does not seek to the requested
location. It doesn't seem to occur all the time - I tried to create a
small example file to illustrate it, but the problem didn't occur.
However, it can be seen with a file I use for
2004 Mar 15
1
gzfile & read.table on Win32
Hello ...
Are there any known problems or even gotchas to look out for when using a
gzfile connection in read.csv/read.table in Windows?
In the package PROcess, available at
www.bioconductor.org/repository/devel/package/html/PROcess.html
there are two files in the PROcess/inst/Test directory which are of the
extension *.csv.gz.
With both files, if I open up a gzfile connection, say:
vv <-