similar to: Installing Packages in Windows Vista -- YES I tried Run as Administrator

Hi, I had originally posted regarding an error when trying to install package - GenABEL - it has now become clear that R is not able to connect to the net. Below are a couple of things I've tried with the resulting errors I am running R 2.6.2 on Linux e15 X86 How can I fix this? Thank you! 1) download.file("http://www.nytimes.com", destfile<-tempfile()) Error: trying URL

Hi all, I am trying to download, decompress and read a csv file. My code: myurl <- "ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE24729/GSE24729_MitoNuclear_suppl_male_stats.csv.gz" # myfile <- "GSE24729_MitoNuclear_suppl_male_stats.csv.gz" # download.file(myurl, destfile=myfile, mode="w") # mycon <- gzcon(gzfile(myfile,

Hello. After run, "installed.packages()" the following error arose: Error in gzfile(file, mode) : cannot open the connection In addition: Warning message: In gzfile(file, mode) : cannot open compressed file

A funny thing happened when I wanted a student of mine to install Brugs. Using the InstallPackages in the windows version, firts gives an erro, but trying again works flawlessly. R version is 2.7.0 on WinXP. Any explanation? Bendix Carstensen ______________________________________________ Bendix Carstensen Senior Statistician Steno Diabetes Center Niels Steensens Vej 2-4 DK-2820 Gentofte

Good Morning, I'm trying to install the rJava package on a local (work) machine and having some trouble. The following occurred in an RGui session. > sessionInfo() R version 2.13.0 (2011-04-13) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5]

Dear R experts, There seems to be a problem (please see the error messages below) with the installation of the latest version of xpose4 (version 4.2.1) with the latest R version.(2.11.1)... I didn't face such installation problems when using version R.2.10.1 Would really appreciate your assistance in debugging installation of xpose 4..2.1 with R.2.11.1 Thanks again.. -Santosh On Wed, Jul

Hi everyone, I want to make use of the save function but it did not work. I'm using vista and R 2.5.0, winzip is installed too. Here's the code (from example ?save): > x <- runif(20) > y <- list(a = 1, b = TRUE, c = "oops") > save(x, y, file = "xy.Rdata") Fehler in gzfile(file, "wb") : kann Verbindung nicht ?ffnen Zus?tzlich:

Just installed Wine and PureEdge so I can work with the US government's forms but am unable to open the form which is a file ending with .xfd extension. Can anyone shed some light on how to get PureEdge started? Using Ubuntu Gutsy and FF Any help is greatly appreciated. Scotty

I have a data vector x. When I try qqline(x) I get the following error: Error in int_abline(a = a, b = b, h = h, v = v, untf = untf, ...) : plot.new has not been called yet And a blank plot appears. Can anybody help? What am I doing wrong? Thanks, Scotty _________________________________________________________________ Contest [[alternative HTML version deleted]]

Full_Name: Vadim Ogranovich Version: Version 1.6.0 (2002-10-01) OS: Red Hat 7.1 Submission from: (NULL) (209.99.241.1) The following sequence of commands crashes my R session. The first weirdness happens after the second command that appears not to change the "foo.gz" file, no error generated. > con <- gzfile("foo.gz", open="w"); cat("goo\n",

Hi people, Version of my beloved Dovecot installation: 2.2.27 (c0f36b0) I moved from a OS X server to a Linux (Ubuntu) Headless server. All fun and good to play around with. Love almost everything. In the combination with Postfix and Dovecot I?m stuck to despair into oblivion. Everything works except I cannot send mail from my (OS X) Outlook client I keep getting: Connection to the

Hello! I am trying to duplicate the studentized bootstrap confidence interval calculations in boot.ci() without using boot.ci(). My w/o boot.ci() calculations are close to boot.ci() using the same object from implementation of boot(), but not quite the same (I think the differences are due to how quantiles are computed for z*). Through examining the boot.ci() code, I can see there is a call

Hi I have been trawling the web, FAQs, and R manuals for help on the following issue, but have failed and was wondering if anyone has a solution to the following problem: After having installed R 2.6.2 for Windows (binary), I tried to install various packages. Every time I try loading a package (any package) via the built-in menu, I run into the following error message. >

Is it just me, or did a corrupt PACKAGES.gz file get installed in the bin/windows/contrib/3.2 directory of CRAN mirrors recently? gzfile() complains about it and Cygwin's gzip cannot decompress it. I tried the following repos <- "https://cran.rstudio.com" v <- "3.2" pkgs.gz <- paste(sep="/", repos, "bin/windows/contrib", v,

When I read a .gz file with readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In

Hi, I am building 2.1.0 (re-release version, if that matters) on a Windows XP machine. Following the instructions 3.1 "Building from source" in R-admin.html, I managed to get up to 3.1.6. But when I try to build the recommended packages, I get C:\hiro\codes\proj\R-2.1.0\src\gnuwin32>make recommended --- Unpacking recommended packages ---- VR make[1]: *** No rule to make target

I don't understand why I can not close 'f'. This may be very simple, but I don't see why. Could somebody let me know? $ cat gzfile.csv "","V1","V2","V3","V4","V5" "1",1,5,9,13,17 "2",2,6,10,14,18 "3",3,7,11,15,19 "4",4,8,12,16,20 $ Rscript gzfile.R > f =

Full_Name: Jarno Tuimala Version: 2.3.1 OS: Solaris / Linux Submission from: (NULL) (193.166.2.98) Today I downloaded the latest source code release R-2.3.1.tar.gz, and it seems not to contain the VR bundle. After running ./configure I get the following error message: checking for recommended packages... ./src/library/Recommended/VR_*.tar.gz: No such file or directory no configure: error: Some

Dear all, In R-devel (2011-09-23 r57050), I'm running into a serious problem with seek()ing on connections opened with gzfile(). A warning is generated and the file position does not seek to the requested location. It doesn't seem to occur all the time - I tried to create a small example file to illustrate it, but the problem didn't occur. However, it can be seen with a file I use for

Hello ... Are there any known problems or even gotchas to look out for when using a gzfile connection in read.csv/read.table in Windows? In the package PROcess, available at www.bioconductor.org/repository/devel/package/html/PROcess.html there are two files in the PROcess/inst/Test directory which are of the extension *.csv.gz. With both files, if I open up a gzfile connection, say: vv <-