similar to: Non-linearity with Parametric data

Hello, Is there an easy function for switching list to matrix. My list is of genetic distances between species pairs: A A 0 A B .5 A C .25 B C .5 and I want a distance matrix such as: A B C A 0 .5 .25 B .5 0 .5 C .25 .5 0 for use in a mantel test. Thank you for the help! cheers, charlie -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Charles G. Willis Department of Organismic

Hello, How can one write the output of a GLM/GEE model to a text file, such that the results appear in text file in the same (or similar) format they appear in the R console? For instance, I have the following model: Traitresult <- compar.gee(Y~X, data = data, family = "binomial", phy = tree, scale.fix = TRUE, scale.value = 1) How would I write "Traitresult" to a text

Hello, I am trying to preform a comparative analysis using the partial mantel method. However, i am having trouble creating compatible matrices. I can create matrices from my numerical data using the 'distance(x, method)' function from ecodist, but the row/column names are out put as numbers. While when i create a phyo-distance matrix using 'cophenetic(x)' from APE, the row/column

Hello, I am running the program COMPAR.GEE within the package APE. My dependent variable is binomial, while my independent variable is a multi-state categorical variable. The output reports an estimate for each state of the independent variable except the first one. For example, for the variable X with 3 states, the output is: intercept (estimate) X2 (estimate) X3 (estimate)

Hello, I am trying to run the APE program COMPAR.GEE with a model containing a categorical response variable and a mixture of continuous and categorical independent variables. The model runs when I have categorical (binary) response and two continuous independent variables (VAR1 and VAR2), but when I include a categorical (binary) independent variable (VAR3), I receive the following output with

Dear R-users: How does one calculate in R the odds ratios for a CATEGORICAL predictor variable that has 4 levels. I see r-help inquiries regarding odds ratios for what looked like a continuous predictor variable. I was wondering how to get the pairwise odds ratios for comparisons of levels of a categorical predictor variable. I can't seem to get the correct output using: >

Hi all, I am trying to bootstrap a small data set into 1000 "pseudodatasets" and then run an ANOVA on each one. Can anyone provide guidance on how I could do this? Thank you. -Dan Janes ************************************************ Dan Janes, Ph.D. Harvard University/OEB 26 Oxford St. Cambridge, MA 02138 Office: 617-496-2375 Fax: 617-495-5667 Email: djanes at oeb.harvard.edu

Hi, is anyone aware of estimation functions for threshold vector error correction / threshold cointegration models? I didn't find anything for R using RSeek or Google. Thanks a lot for any pointers, Werner __________________________________________________ Do You Yahoo!? hutz gegen Massenmails. http://mail.yahoo.com

Hi All, Two weeks ago, I received instructions from the R list about creating pseudodatasets by bootstrapping an existing dataset 1000 times. I received code that bootstrapped my dataset and ran an ANOVA on each pseudodataset, producing a histogram of F-values. Here is the code I received that produces this F-histogram. X <- data.frame(b=rnorm(2162),c =factor(rep(1:47,each=46))) ##

Dear All, I've just installed Samba version 1.9.18p10 on one of our HP-UX boxes. The unix box is advertising itself with two WINS names. netbios name = ukswi0103 netbios aliases = ukswi0104 in smb.conf I've been playing with the idea of changing the behaviour of the server based on what the client calls it. What I'd like to do is have samba do security = user if the client

hello there how can i monitor an app. what i need most is when and where error pages were printed to user, such as RoR errors, database problems or such. is there an instance problem that i can use avalaible to views or helpers ?????? ______________ Heri R. http://sprinj.com -------------- next part -------------- An HTML attachment was scrubbed... URL:

On Thu, 17 Jul 2008 15:49:42 +0200 Micha? Wi?niewski <brylozketrzyn at gmail.com> wrote: > Hi > > I'm writing to you cause I want to help with noveau. I have GF 5200 card and I > can dump any data you need from it's registers, of course, avalaible to dump > with nvclock. Just write what test you want me to perform (if possible, with > explanations; I'll set

Hi all, I am using Centos 4.1 with Gnome and my updates are OK (When I do yum update, I have nothing anymore) Normally, with GNOME there's a task bar in the bottom of the screen. If we open an application and we minimize its window, it is always avalaible in this task bar. There are other things in this task bar : a button on the left which is used to minimize all the opened windows and

Hello everybody, I need to read a file with a header (EDF files, recorded electroencephalogram signals) that has fixed byte positions for each field of its header. These fields have no separator between them, for example: <8 ascii name of the patient><10ascii start time of the recording><4 ascii ... > etc. I read that perfectly in Octave by using fread, fseek and other

Hi. I need to compile an R package under Windows, to get a zip file. I can't used the web services, because it is avalaible only for the current version of R while I need of a package compiled with R 2.13.1. The package contain C code that requires the GSL C library. In your experience, what is the best way to compile an R library? I read the R manuals, now I need some tricks with

Hello I have 4 NT server : so 4 NT Domain and 1 Linux Box with samba 1.9.18p4-50.4 in smb.conf, I configure netbios aliases = TEST1 TEST2 TEST3 TEST4 sercurity = server include = /etc/samba/server.%L ... and in /etc/samba/server.TEST1 password server = NTSERV1 and in /etc/samba/server.TEST2 password server = NTSERV2 but when I read the nmbd and smbd logs , %L is replaced by a null string

Hi all, I'll try to explain my suggestion with my poor english. I've got the feeling that icecast is full of potential but not growing as fast as it can or simply not having the support it could have. The greatest lack are the "open doors" for new coders, webdesigners, translators, etc. Icecast is open: the sourcecode is open, the mailing list is open, etc. But a skill is

I am writing regarding serious problems that a number of researchers at a workshop held by the Smithsonian Tropical Research Institute are encountering with the most recent R version for Macs (the patched version of 2.1.0 (2.1.0a) that you indicate should be used over 2.1.0). The following problems are not specific to my computer but are being experienced by ALL Mac users at this workshop

Dear R users, I just noticed that the function "dos.time" is no longer included with _ platform Windows arch x86 os Win32 system x86, Win32 status Release major 0 minor 65.1 year 1999 month October day 07 language R What if any is the difference between "system.time" and

Dear list members, I am trying to use the maptools library to display geographical data. At the moment I have some trouble understanding how the " auxvar " variable is supposed to be used in the plot.Map function. I am using R Version 1.8.1 (2003-11-21) on Linux Looking at the plot.Map function itself, I see that it calls a color.ramp function (I am reporting only the relevant