similar to: Exporting of R dendrogram object in the format of Eisen´s Cluster

Dear R-users, I run my program a difference between sys.times is as follows: user system elapsed 60167.53 2848.75 63278.93 I am quite puzzled how it may happen that system time is so much shorter than user time, I have 2 core computer most of the time (90%) I was not doing anything else with the computer. What could be the reason of such a difference? I switched off file indexing and all

Dear R-users, I would like to construct a list of arguments for a function in a format function (list(item1=c("A","B"), item2=c("B","C")), item3=...): The individual vectors in the list are permutations of colnames of a dataframe. The trouble is that I am not able to handle escaping of parentheses correctly. I was trying the following: library(gregmisc)

I am attempting to replicate what Cluster 3.0 and Treeview (both by Mike Eisen) to cluster both microarray genes and arrays does using R with hclust. I basically utilized the plot.mat function in sma library with some layout() and hclust(). 1. Can I know if some has already written such a function or available in some package. 2. If not, would appreciate if someone could take the time to test

Dear R-users, is there some way how to pass various colnames to the following code for sorting data.frames? mydf.ordered<-with(mydf, mydf[order(colname1,colname2, colnameX, decreasing = TRUE), ]) I was trying something like Afunction<-function (mydf,colnames,decreasing=T){ mydf.ordered<-with(mydf, mydf[order(colnames, decreasing = decreasing), ]) } but it didnt work please

Dear colleagues, I would like to have GAM regression lines (package gam) thicker than the default setting does. Is there any way to change the width of regression line when plotting gam.objects from the package GAM with more than one predictor? Changing lwd parameter in plot function controls all line components, including points making them thicker as well, which is not what I would like to

Dear list members, I would like to merge multiple dataframes and seems that this task is going to be required quite often, so I decided to write a simple (pseudo)recursive merge. I started with the case when dataframes are merged by rows (0). But there is a problem when a dataframe to be merged in the step n has some items that are not in previous ones. Then I get "Error in match.names(clabs,

Dear all, We are trying to install a new Samba server to replace the old one and support Windows 7 clients. But it doesn't work ! When we try to register a machine into th domain, it seems to be accepted by the client but we find these messages in samba logs : > rpc_server/srv_netlog_nt.c:_netr_ServerAuthenticate2(555) > _netr_ServerAuthenticate2: netlogon_creds_server_check

Hi, I am using RH 7.2 Enigma and with ext3 filesystem. Before installing RH Linux, I used Partition Magic 7 in Windows to prepare partition ext2 for Linux which was then converted to ext3 when installing RH 7.2. Now that I want to expand the space for the Linux partition, I find out that PM 7 does not support and recognize ext3 filesystem. My questions then are: 1. How do I convert ext3 to

My name is Kenji Ichinoseki and I am in charge of a project at Sumitomo Electric Networks, Inc. Please give me cooperation by all means about the affair in the account of a title. Now, I included "Samba 3.0.37" in the Linux system currently developed (us). And it is testing using "smbtorture(samba3.5.8 source4) ". The point in question was found in our entry of this test. It

Hi Folks, I'm running rsync between an NT client and a Solaris 7 Server (Ver 2.4.6). I'd like to be able to exclude the following directory: /opt/IBMHTTPDLOG/archivelogs but retrieve /opt/IBMHTTPDLOG My setup is: rsync -av -p -e rsync@server1.cna.com:/opt/IBMHTTPDLOG/ F:/opt/IBMHTTDLOG (client) rsync --daemon --exclude-from=/etc/rsync.exclude (server) What I get is

Hello everyone, I have the following code which keeps giving me an error. The code is: dat<-read.table(file="C:\\Documents and Settings\\Owner\\My Documents\\eisen.txt",header=T,row.names=1,blank.lines.skip=F,na..strings="NA") dimnames(dat)((1)) <-as.character(dat(,1)) dat<-dat(,-1) dat<-as.data.frame(dat) file.show(file="C:\\Documents and Settings\\Owner\\My

Hi to all, I have a question about the callerid (msn number) off calls comming FROM a queue. This is my setup: - ISDN using zap (zaphfc) - Incomming calls arrive in a queue - One of the members of the queue is my cell phone... member => Zap/g1/XXX73XX19 (X to protect my privacy ;-)) The problem is the call from the queue to my cell phone. In a dailplan i can set the outgoing msn using

Hi All: I am going thru the documentation and I noticed that there is some talk about returning error codes. Some Q:s * If rsync encounters a network error, does it do retries ? Can you control the # of retries ? * Do the rsync client & server stop running upon encountering an error ? Can you tell rsync to stop upon the first error encountered ? * If the remote rsync encounters an

But it sounds like there is definitely an rsync port to D'ohnet -----Original Message----- From: rsync-bounces+eisen.chao=cna.com@lists.samba.org [mailto:rsync-bounces+eisen.chao=cna.com@lists.samba.org] On Behalf Of Mark Thornton Sent: Friday, July 15, 2005 2:18 PM To: Stuart Halliday Cc: rsync@lists.samba.org Subject: Re: DotNet Version Of Rsync Stuart Halliday wrote: >R-type Studios

Hi All: I thought the default behaviour for Rsync was that it would only overwrite destination files that have a lesser date than the source file. Instead I have this: Source ibmhttpd@sch1p115 [/csapps115/IBMHTTPD/content-external/cna/html/meet]: ls -al meet.html -rwxr-xr-x 1 ibmhttpd ibmhttpd 30151 Jul 9 2002 meet.html Destination ibmhttpd@sch1p116

Dear all, I am happy to tell you that I received a Digium's TDM20B card for my Asterisk box today. but the phone jack is RJ45 instead of RJ11. So Please I need precise instructions to connect a phone to this card. please, assume that I have a phone (a normal analouge phone connected to the one end of a cable with an RJ11 jack (at the phone side). and now I want to connect the other end to the

Hi there, I have tried enough of it and couldnt get any where. I have a Redhat 9.x box with rsync I want to backup contents on the RH to Win2K box. I have copied required cygwin DLL's and rsync.exe,ssh-keygen.exe and ssh.exe. I set up my pub rsa id and all that stuff. My problem is here: I have a batch file which logs itself. The batch file contains some logging commands and rsync -avze ssh

Hi, all. I'm trying to cluster 12,500 objects using hclust from package mva. The distance matrix takes up nearly 600 MB. The distance matrix also needs to be copied when being passed to the fortran routine that actually does the clustering (it's modified during the clustering), so that's 1200 MB. I'm actually on a machine with 2.5 GB of memory (and nothing else running), so I

Hi, I drew a plot with R of my data and now I would like to display the median values of each group above the respective datapoint in the plot. I already search for ages, but maybe I am just blind. I am sure that this has to be an option somewhere... I appreciate any kind of input! Best, Christian

Dear All, Just start to use the long expected R, my focus will be doing clustering on microarray data, just wonder, anyone can show me any references to conquer the steep learning curve? Thanks! Best regards, Baoqiang Cao