similar to: Writing GLM/GEE Ouput to Text File

Hello, Is there an easy function for switching list to matrix. My list is of genetic distances between species pairs: A A 0 A B .5 A C .25 B C .5 and I want a distance matrix such as: A B C A 0 .5 .25 B .5 0 .5 C .25 .5 0 for use in a mantel test. Thank you for the help! cheers, charlie -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Charles G. Willis Department of Organismic

Hello, I am trying to test for non-linearity in a set of non-parametric data. Furthermore, I would like to do so in a multi-variate model. Frankly, I don't even know if this is possible, and if it is possible, I don't know if it is implemented in an R package. Any advice would greatly appreciated. Thank you! Charlie -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Charles G.

Hello, I am running the program COMPAR.GEE within the package APE. My dependent variable is binomial, while my independent variable is a multi-state categorical variable. The output reports an estimate for each state of the independent variable except the first one. For example, for the variable X with 3 states, the output is: intercept (estimate) X2 (estimate) X3 (estimate)

Hello, I am trying to run the APE program COMPAR.GEE with a model containing a categorical response variable and a mixture of continuous and categorical independent variables. The model runs when I have categorical (binary) response and two continuous independent variables (VAR1 and VAR2), but when I include a categorical (binary) independent variable (VAR3), I receive the following output with

Hello, I am trying to preform a comparative analysis using the partial mantel method. However, i am having trouble creating compatible matrices. I can create matrices from my numerical data using the 'distance(x, method)' function from ecodist, but the row/column names are out put as numbers. While when i create a phyo-distance matrix using 'cophenetic(x)' from APE, the row/column

Dear R-users: How does one calculate in R the odds ratios for a CATEGORICAL predictor variable that has 4 levels. I see r-help inquiries regarding odds ratios for what looked like a continuous predictor variable. I was wondering how to get the pairwise odds ratios for comparisons of levels of a categorical predictor variable. I can't seem to get the correct output using: >

Hi all, I am trying to bootstrap a small data set into 1000 "pseudodatasets" and then run an ANOVA on each one. Can anyone provide guidance on how I could do this? Thank you. -Dan Janes ************************************************ Dan Janes, Ph.D. Harvard University/OEB 26 Oxford St. Cambridge, MA 02138 Office: 617-496-2375 Fax: 617-495-5667 Email: djanes at oeb.harvard.edu

Dear all, I don't understand the following behaviour: Running compar.gee (in library ape ) with and without the option 'data', it give me different results Example: .... Start R .... > load("eiber.RData") > ls() [1] "gee.na" "mydata" "mytree" > library(ape) > # runnig with the option data= mydata > compar.gee(alt ~ R,

Hi, I'm attempting a comparative analysis using the function compare.gee, package (ape), which uses phylogeny as a correlation matrix in gee (package gee), in R version 2.2.0 on a Windows XP PC. I'm looking to model the relationship between a continuous explanatory variable and a binary response variable for 600 species, taking into account the phylogeny of those species. Here's

Hi All, Two weeks ago, I received instructions from the R list about creating pseudodatasets by bootstrapping an existing dataset 1000 times. I received code that bootstrapped my dataset and ran an ANOVA on each pseudodataset, producing a histogram of F-values. Here is the code I received that produces this F-histogram. X <- data.frame(b=rnorm(2162),c =factor(rep(1:47,each=46))) ##

Dear All, I've just installed Samba version 1.9.18p10 on one of our HP-UX boxes. The unix box is advertising itself with two WINS names. netbios name = ukswi0103 netbios aliases = ukswi0104 in smb.conf I've been playing with the idea of changing the behaviour of the server based on what the client calls it. What I'd like to do is have samba do security = user if the client

Hello I have 4 NT server : so 4 NT Domain and 1 Linux Box with samba 1.9.18p4-50.4 in smb.conf, I configure netbios aliases = TEST1 TEST2 TEST3 TEST4 sercurity = server include = /etc/samba/server.%L ... and in /etc/samba/server.TEST1 password server = NTSERV1 and in /etc/samba/server.TEST2 password server = NTSERV2 but when I read the nmbd and smbd logs , %L is replaced by a null string

Hello, These are implementations of strverscmp, scandir, alphasort and versionsort, and some test cases for them. I know these aren't in POSIX, but they're useful, nonetheless, and someone else might be interested in them. Regards, Luciano Rocha -- lfr 0/0 -------------- next part -------------- /* ----------------------------------------------------------------------- * * *

I am writing regarding serious problems that a number of researchers at a workshop held by the Smithsonian Tropical Research Institute are encountering with the most recent R version for Macs (the patched version of 2.1.0 (2.1.0a) that you indicate should be used over 2.1.0). The following problems are not specific to my computer but are being experienced by ALL Mac users at this workshop

Dear list members, I am trying to use the maptools library to display geographical data. At the moment I have some trouble understanding how the " auxvar " variable is supposed to be used in the plot.Map function. I am using R Version 1.8.1 (2003-11-21) on Linux Looking at the plot.Map function itself, I see that it calls a color.ramp function (I am reporting only the relevant

Add support for scandir() and alphasort() as defined in POSIX.1-2008. Signed-off-by: Mike Waychison <mikew at google.com> --- usr/include/dirent.h | 7 +++++ usr/klibc/Kbuild | 2 + usr/klibc/scandir.c | 76 ++++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 84 insertions(+), 1 deletions(-) create mode 100644 usr/klibc/scandir.c diff --git

Hello, I am having problems with plotting to a postscript device within a function call. When I do the same thing line by line in the command line interface, I have no problems, but the function creates an empty postscript file. If I remove the dev.off() call at the end of the function, I get one of the plots (the last), but not the others. Is there any way to get around this problem, or a

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Basically i am running input via rails into ffmpeg which is a shell program. Is there a way i can take the output of the shell and store it into a string? or any other form that i can manipulate. andrew p.s. i am trying to read the dimensions of a video file via ffmpeg and use this value in my rails app. -- Posted via http://www.ruby-forum.com/.

Hello: What would be the best way to Output Code in TextArea for a UI component? The Rails App View is pure HTML and JavaScript. 1.render in text for controller action and the text is the code string. The < and > etc can be passed as is in this mode. 2.Read a HTML Template File (containing JS and CSS references) in Public directory(?) that needs to be substitute some variables that were