similar to: Plot contour over filled contour

Hi everyone, I have two questions: I would like to get confidence intervals on the coefficients derived from the optim() function. I apply optim() to a given function f > res <- optim(c(0.08,0.04,1.),f,NULL,method="L-BFGS-B",lower=c(0.,0.,0.)) And I would like to get the p-value and confidence intervals associated with > res$par My second question deals with error message. I

Hi Everyone, I have updated my R version from 2.7 to 2.8 (patch) and since then I can not open HDF5 files that I saved previously with the command hdf5save from the hdf5 library. As anyone had that problem yet? Any help would be appreciated. Thanks Emmanuel ------------------------------------------- Dr. Emmanuel Devred Bedford Institute of Oceanography, 1 Challenger Drive, Dartmouth, Nova

Dear all, I have a problem with the function Julian, may be a bug in the function ? Here is a vector of character, which represents dates (May 18 to May 20 2000): > amj <- c("2000-05-18","2000-05-18","2000-05-18","2000-05-19","2000-05-19" > ,"2000-05-19", "2000-05-19", "2000-05-20", "2000-05-20",

Hello, I am trying to use cluster.overplot from package plotrix and I get an error message when I add the "away" parameter: require(plotrix) distance <- read.table("distance.txt") cmd <- cmdscale(distance) cp <- cluster.overplot(cmd, away=2) Error in if (sum(overplots) > 1) { : missing value where TRUE/FALSE needed If I don't use "away",

I'm having trouble making contour lines for this attached, sparse dataset (low data:NA ratio!). Is it the high number of NA's, or funny layout of the densities, or something else that's causing this? This is a subsample of the dataset, and I get the same problem when using the full data. The only reason I get any contours is because I'm forcing specific levels. If no levels are

Hello! I am working with signals and a plot of several signals on the same axes can get quite messy. With lines that are very fractured, distinction by only the linestyle is not very clear. If I add symbols to the plot however, there are so many symbols, that they overplot and the whole plot is unreadable once again. I am looking for advice on how to make a plot with continuous lines and symbols

Hello I was wondering how I can achieve matlab style plotting in R, in the sense that matlab allows you to plot multiple sets of variables within the same x-y axes. plot in R does not seem to cater for this. I tried 'overplot' from the gplots package but this assumes different y axes for the variables. any suggestions would be very appreciated Maria [[alternative HTML version

hi all, It's not clear to me how (or if) I can pass multiple values for lty to a key in xyplot? I've tried: lines=list(lty=1:3), to no avail. Do I need to use something other than auto.key? (Deepayan, if you're out there, I have your book and must admit the answer isn't jumping out at me.) thanks in advance! Michael Folkes example code: #____________________________

Hello, I have a dataset with 4 variables, each consisting of a vector, all with the same length. I start by interpolating the first three variables using the function "interp", and plot the interpolation successfully using "filled.contour". I then interpolate the first two variables and a fourth using "interp" again, but when I try to overlay the contour lines

Hi, I'm trying to plot some data (z) that is linked to lat&long coordinates (x&y). These coordinates are not however on a regular grid. I also have some shapefiles on which I would like to overlay the data. I can plot the shapefiles (country/city outlines) and overplot the data, but only using quilt.plot because I otherwise always get the error message that 'Error in

Hello all, I've been using binconf (package Hmisc) at a range of alpha values and noticed that using the 'Wilson' method when alpha is larger (i.e. narrow CI), results in the upper value being smaller than the lower value. The 'exact' and 'asymptotic' methods give results in the realm I'd expect. But the help file suggests: "Following Agresti and Coull, the

Hi I am trying to install Samba on a QNX 4.24 system. When we run the make file we get an error : compiling server.c make:cc:command not found make: *** [server.o] error 127 Can you help with this! Lucille Shears Systems Analyst CCG/DFO shearsl@dfo-mpo.gc.ca (709) 772-3131 cell (685-1512)

Perhaps somebody could clarify for me if the following is a floating point matter or otherwise, and how am I to correct for it? > floor(100*.1) [1] 10 > 100*(1.0-.9) [1] 10 > floor(100*(1-0.9)) [1] 9 Thanks! Michael _______________________________________________________ Michael Folkes Salmon Stock Assessment Canadian Dept. of Fisheries & Oceans Pacific Biological Station

Dear R Community: Recently, I have managed to plot some really useful graphs of my research data using persp(). I have even figured out how to overplot rectangular regions (corresponding to submatrices) with a different color. This is accomplished by using par(new=T). I am now searching for a way to "highlight" a set of (possibly non-contiguous) facets with a specific color,

I'm using RODBC to read an excel file (not mine!). But I'm struggling to find a way to preserve the column names that have a numeric value. sqlFetch() drops the value and calls them f1, f2, f3,... (ie field number). this is a different approach from read.csv, which will append "V" prior to the numeric column name. sqlFetch isn't so helpful. Is there a way to get the

I'm looking for an optimal approach to access Oracle databases via RWeb applications. I'm new to R but familiar with programming functions and web pages for the S+ Statserver. I'm now going through the motions of migrating S+/Statserver applications to R/RWeb as a feasability exercise. I can access databases using ODBC directly in R or S, and using Statserver, but I have not succeeded

Hello, I'm having trouble with using the alpha channel for transparency with lines with lattice levelplots. If I use transparency via the alpha argument to rgb to overplot lines on levelplot the transparent colour affects all of the region colours in the plot. Can anyone explain why the difference in region colours? #### Warning: this code attempts to create PDF files in working directory

This is a bug apparently caused by Windows XP's interaction with R. I was getting an error message when running C:\Program Files\R\rw1081\bin\Rgui.exe. Odly enough, his problem was happening only when I was not connected to the network using my ethernet connection. Using Google, I found the same error described on a thread (see attached) as: > The R installation is fine on Windows XP,

Hello all, I'm hoping to convert a decimal value for week of the year back to a date object. Eg: strptime(paste(2010,1:52,sep=" "),format="%Y %W") I expected (hoped?) this would give me the date for Monday of each week. Instead, it's giving me 52 values of today's date. Where am I erring? Thanks Michael _______________________________________________________

Hello r-help, I am trying to collapse or aggregate 'some' of a data frame. A very simplified version of my data frame looks like: > tester trip set num sex lfs1 lfs2 1 313 15 5 M 2 3 2 313 15 3 F 1 2 3 313 17 1 M 0 1 4 313 17 2 F 1 1 5 313 17 1 U 1 0 And I want to omit sex from the picture and just get an addition of num,