similar to: build options for R

Hello Everyone, I had posted the message below to the r-help listserv... >Recently I was given a Java servlet based web calculator that will >call R (libR.so to be exact) but I am having trouble trying to disable R >from requiring --save, --no-save or --vanilla... Is there any way to >build R on linux and disable R from asking --save, --no-save or --vanilla?? I received this

Hello Everyone, We have recently purchased a server which has 64GB of memory running a 64bit OS and I have compiled R from source with the following config ./configure --prefix=/usr/local/R-2.9.1 --enable-Rshlib --enable-BLAS-shlib --enable-shared --with-readline --with-iconv --with-x --with-tcktk --with-aqua --with-libpng --with-jpeglib and I would like to verify that I can use

So I'm working on a custom front end to R, in one mode of the front end I dynamically load libR.so into a child worker thread. I'm very careful to make sure it is loaded by a single thread and loaded only once, but since it is a child thread it violates assumptions made by the stack size checking inside of R and I get innumerable errors along the lines of Error: C stack usage

When running R from the terminal on Linux (Ubuntu 16.04), it core dumps whenever / wherever I press Ctrl-4 or Ctrl-\. You get thrown back to the terminal with "Quit (core dump)" being the only message. Grepping the R source code, it doesn't look like that message is generated by R itself. Over on Twitter, it has been confirmed to also happen on macOS. $ R -d valgrind --vanilla

Simon, Ah, thank you! quiet right. For anyone searching for this in the future, I changed my init fuction to: ---------- SNIP ---------------- void init_r() { SEXP aperm_function; /* this is our version of Rf_initEmbeddedR where we disable stack checking */ const char *init_argv[] = {"MyFront", "--vanilla", "--slave"}; Rf_initialize_R(sizeof

I have a test directory for the survival suite, and dyn.load has ceased to work in it. Below shows the log: tmt1075% R --vanilla R version 2.12.2 (2011-02-25) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain

Dear all: I have a problem with calling R from Java, It was ok at the first time,but the error message "An unexpected exception has been detected in native code outside the VM. " will appear. What is the issue of "native code"? Could somebody help me ? Thanks, ken This is the log I obtained: executing: source('/export/home/users/ruser/java/Rmain.R') Loading

Hello, I don't know if this question ought to go here, or rather on R-devel, so please bear with me. I'm interfacing to R via RPy (rpy.sf.net) and an embedded Python interpreter. This is really quite convenient. I use this approach to calculate the correlation coefficient of 1 independent dataset (vector) with 4 dependent vectors. It'd be nice if that could be done in 4 parallel

Hello, I don't know if this question ought to go here, or rather on R-devel, so please bear with me. I'm interfacing to R via RPy (rpy.sf.net) and an embedded Python interpreter. This is really quite convenient. I use this approach to calculate the correlation coefficient of 1 independent dataset (vector) with 4 dependent vectors. It'd be nice if that could be done in 4 parallel

Hello, I've been struggling with a problem for the past several weeks, trying to get PL/R (R procedural language handler for PostgreSQL, http://www.joeconway.com/plr/) to work on Red Hat 9. In brief, R dumps core during the embedded library initialization, while in Rf_regcomp(), working on on Rprofile. Below I've included the important parts of a backtrace: Program received signal

I'd like someone familiar with the R options initialization to comment on a difference of behavior within/without mpiexec I have a (.NET) application with embedded R that is proven to run in a single process: ./Sample1.exe on a Debian Linux with R 3.0.2 Running the same code with mpiexec, it fails at the R engine initialization: mpiexec -n 1 ./Sample1.exe Fatal error: you must

A couple of my colleagues are having problems building R-3.2.4 on Mac OS X El Capitan somehow related to libiconv. I personally don't have any problems on either of my Macs. I'm hoping thie make log might trigger something in the readers of this list: gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib

I did some poking around with GDB and confirmed that the advice of setting R_CStackLimit after init, which is echoed in the "threading issues" section of the R-exts help document, isn't entirely useful because init apparently loads the main package which trips over the broken stack checking. Stack trace: #0 R_SignalCStackOverflow (usage=140732197147604) at errors.c:81 #1

Hi, I got the following problem when I type make. The error is not enough verbose to me so I can find the problem. Please cc me, I'm not subscribed. Thanks, Mathieu --------------------------- make[4]: `vfonts.so' is up to date. building system startup profile building package 'base' all.R is unchanged ../../../library/base/R/base is unchanged dyld: lazy symbol binding failed:

I've installed jdk-1_5_0_08-linux-i586.rpm and Tomcat. Working through some initial test install programs, I am finding that I can't seem to compile .java files into classes. For instance... javac -classpath /usr/local/tomcat/common/lib/servlet.jar HelloWorld.java as instructed fails with a gij: unrecognized option -- `-classpath' Try `gij --help' for more information. So

https://bugzilla.mindrot.org/show_bug.cgi?id=3481 Bug ID: 3481 Summary: PAM_TEXT_INFO messages are shown twice if they are the last conversation Product: Portable OpenSSH Version: 8.4p1 Hardware: Other OS: Linux Status: NEW Severity: normal Priority: P5 Component:

I'm very green with R, so maybe this is not a bug, but it looks like one to me. The following program segfaults at the second call to Rf_PrintValue(). To failure depends on the value of the y-string. E.g., if I change it from "coverage" to, say, "COVERAGE", the segfault does not occur. /* bug.c */ #include <stdio.h> #include <Rinternals.h> #include

Hello, I am interesting in using R from a web application, for basic statistics and plots. The server is Java-based (tomcat). The simplest solution is a system call that generates the text or the image, then the servlet forwards the output. This can be done from any language, but it is quite inelegant and slow for the initialization time. Is there any package or approach for accessing R from a

Hello All, One of our user is facing java.lang.OutOfMemoryError: PermGen space issue on a Windows 2003 32 bit xVM domU with 4GB RAM. He is able to successfully do these tests on equivalent physical system with Windows 2003 OS and 4GB RAM. Another user is facing issues with Tomcat running out of heap space on a Win2008 64bit xvM domU Our xVM hypervisor server is X4150 server with 64GB RAM

Hi, my name is Dieter and this is my 1st post to the list. I''m currently using shorewall 2.2.5 on SuSE 9.2 and java 1.4.2_06. Overall everything works as expected. The problem I have occurs with previous versions of shorewall, too. Problem: When I start a java application like crushftp it takes about 2 minutes until the server is functional. If I try to interrupt the startup process