similar to: Excel export into R

> dim(data.sub) [1] 10000 140 #####extracting all differentially express genes########## library(multtest) two_side<- (1-pt(abs(data.sub),50))*2 diff<- mt.rawp2adjp(two_side) all_differ<-diff[[1]][37211:10000,] all_differ #####list of differentially expressed genes########## > probe.names<- + all_differ[[2]][all_differ[[1]][,"BY"]<=0.01] Error in

Hi Everyone, I am trying to use lmFit function; however, i cannot find it function anywhere. I have been trying to find the function in Bioconductor and elsewhere. I re-install bioconductor source, update package and update R as well. no luck Is there a command in R where i can just type, and it will download it for me? -- View this message in context:

Hi, All i want is to export my list into c: drive and save it as csv file and manually import into Excel. I have the read the article but i am having issues http://pbil.univ-lyon1.fr/library/base/html/write.table.html > excel<-write.table(probe_gene, file = "c:\foo.csv", sep = ",", col.names = > NA) Error in file(file, ifelse(append, "a", "w"))

Here is my R Code x<-1:20000 y<-2:141 data.matrix<-data.matrix(data[,y])#create data.matrix variableprobe<-apply(data.matrix[x,],1,var) variableprobe #output variance across probesets hist(variableprobe) #displaying histogram of variableprobe write.table(cbind(data[1], Variance=apply(data[,y],1,var)),file='c://variance.csv') #export as a .csv file. Output in Excel all in 1

Hello, I am to run this R script but i keep getting this error. > expr<-exprs(golubMerge) Warning message: The exprSet class is deprecated, use ExpressionSet instead I tried to find information on the website but no luck. (exprSet...etc) thank you. -- View this message in context: http://www.nabble.com/expression-matrix-tp15912874p15912874.html Sent from the R help mailing list archive

Hello, Thanks everyone for helping me with the previous queries. step 1: Here is the orginal data: short sample ProbeID Sample_1_D Sample_1_C Sample_2_D Sample_2_C 1 224588_at 2.425509867 11.34031409 11.46868531 11.75741478 step 2: i calculate the variance of the sample using this R code x<-1:20000 y<-2:141 data.matrix<-data.matrix(data[,y])#create data.matrix

Hi Everyone, I need some simple help. Here are my codes ##########will give me 10000 probesets#################### data.sub = data.matrix[order(variableprobe,decreasing=TRUE),][1:10000,] dim(data.sub) data_output<-write.table(data.sub, file = "c://data_output.csv", sep = ",", col.names = NA) When i export to excel, it shows me this. This is just a short version. There

Hi, I am supposed to use exprs as a function. Where can i download exprs function? I tried searching at bioconductor and seach engine but no luck. Is it located in one of the library in R? thanks. C -- View this message in context: http://www.nabble.com/exprs-function-download-tp15654560p15654560.html Sent from the R help mailing list archive at Nabble.com.

Hello, I am trying to use the p.adjust function for multiple testing. here is what i have 9997 201674_s_at 0.327547396 9998 221013_s_at 0.834211067 9999 221685_s_at 0.185099475 I import them from excel have have the gene symbol as well as the pvalue here is the issue > pa<-p.adjust(pt,method="BH") Error in p[nna] : object is not

Hi Guys, I am having a real hard time trying to figure out for microarry. Here is my code One-Sample t-Test dim(data.sub) [1] 10000 140 ##there are 10000 probesets and 140 columns hist(data.sub) ## Histogram. Identify if the probesets are normal distributed q<-rnorm(10000) ##generate 10000 random, normal distributed values qqplot(data.sub,q)) ##Show the plot of the probeset

asterisk-1.8.13.0 iksemel-1.4 I have a client who setup a gvoice account using their domain in the login name: username=client at theirdomain@gmail.com This appears to have caused a problem with authentication. I've tried escaping the @ and quoting the login string, etc. but it simply won't authenticate. I don't believe my configuration is bad as the same server /

Anyone know if Rhino is planning on supporting zaptel 1.4 anytime soon? ________________________________ This e-mail, facsimile, or letter and any files or attachments transmitted with it contains information that is confidential and privileged. This information is intended only for the use of the individual(s) and entity(ies) to whom it is addressed. If you are the intended recipient, further

R version 2.13.1 OS X (or Windows) Colleagues, I received a number of files with a .xls extension. These files open in XL and, by all appearances, are XL files. However, it appears to me that the files are actually XML: > readLines(dir()[16])[1:10] [1] "<?xml version=\"1.0\"?>" [2] "<Workbook

JABBER: gtalk_account OUTGOING: <?xml version='1.0'?><stream:stream xmlns:stream='http://etherx.jabber.org/streams' xmlns='jabber:client' to=' gmail.com' version='1.0'> localhost*CLI> jabber show tes JABBER: gtalk_account INCOMING: <?xml version="1.0" encoding="UTF-8"?><stream:stream from="gmail.com"

Hi, in these dark days of COVID-19 lockdown I'm using linphone to connect to my office asterisk system for working from home. It's going pretty well but the presence/BLF functions don't appear to work. In the linphone logs and asterisk debug I find that asterisk is rejecting linphone's PUBLISH message: <--- SIP read from UDP:10.27.128.3:5060 ---> PUBLISH sip:john at

Hello, I'm having a look at section 13.1 from SIP Connect v2 doc (see [1]). It refers to RFC6442 which gives the following example (sorry for its length): INVITE sips:bob at biloxi.example.com SIP/2.0 Via: SIPS/2.0/TLS pc33.atlanta.example.com;branch=z9hG4bK74bf9 Max-Forwards: 70 To: Bob <sips:bob at biloxi.example.com> From: Alice <sips:alice at

Hi all, Ruby 1.8.4 Rails 1.1.2 I''m a newb when it comes to SOAP, but I thought I''d give it a shot. I have several web services defined. However, when I try to connect with a SOAP client it seems the client is only picking up one of the services, called Hardware. require ''soap/wsdlDriver'' wsdl_url =

Hi, The code for my Rails webservice is below. It working just fine through the Rails web service scaffold invoke http://localhost:3000/ProductBackend/invoke I''m trying to write a plain ruby command line client to access the webservice. require ''soap/rpc/driver'' proxy = SOAP::RPC::Driver.new("http://localhost:3000/product_backend",

Hello all, I am having trouble getting gtalk to work with my account which is not using a gmail.com email address. When I do this there an error from the Jabber module: [Feb 3 20:51:17] ERROR[6286]: res_jabber.c:573 aji_act_hook: JABBER: Node Error [Feb 3 20:51:17] WARNING[6286]: res_jabber.c:1495 aji_recv_loop: JABBER: Got hook event. JABBER: gtalk_account INCOMING:

I am having an issue where I am trying to test a weservice that I wrote by connecting to it from ruby. When I submit my form that calls the webservice it times out. you can see from the lighttpd log that the webservice completes just after the timeout. any ideas? am I doing something wrong? ---- source ---- def validate auth = ActionWebService::Client::Soap.new(AuthApi, "