similar to: counting sequence mismatches

Displaying 20 results from an estimated 400 matches similar to: "counting sequence mismatches"

2012 Oct 17
3
subtotals based on price bands?
I would like to create a subtotal table with custom bands. seq1 = seq(0, 100, by = 5) seq2 = seq(100, 1000, by = 100) Bands = c(seq1, seq2) #Prices Prices = sample(1:1000, 200, replace=F) #corresponding size for the given price above. size = sample(1:1000, 200, replace=F) How would I find the subtotal of the size based on a given price falls within a band? -- View this message in
2007 Dec 05
2
exim/kmail vs. dovecot
I am using exim via dovecot_deliver to store messages in Maildir in my $HOME. I am using kmail to retrieve stuff. Unfortunately, something in my data crashes dovecot. I was using 1.0.rc14 from opensuse, but downloaded and installed 1.0.8 from the site. Here is the crash: Dec 5 18:05:09 h743107 dovecot: IMAP(kris): file mail-index-transaction.c: line 629 (mail_index_update_flags_range):
2008 Feb 21
1
Selecting timestamps
R-users, I have two vectors (of timestamps) d1 <- as.POSIXct(strptime("2.2.2002 07:00", format="%d.%m.%Y %H:%M")) d2 <- as.POSIXct(strptime("4.2.2002 07:00", format="%d.%m.%Y %H:%M")) seq1 <- seq(d1, d2, "hours") seq1 d3 <- as.POSIXct(strptime("2.2.2002 15:22", format="%d.%m.%Y %H:%M")) d4 <-
2008 May 28
2
Unexpected behaviour in reading genomic coordinate files of R-2.7.0
Great R people, I have noticed a strange behaviour in read.delim() and friends in the R 2.7.0 version. I will describe you the problem and also the solution I already found, just to be sure it is an expected behaviour and also to tell people, who may experience the same difficulty, a way to overcome it. And also to see if it is a proper behaviour or maybe a correction is needed. Here is the
2007 Jan 26
2
Why do return or visible don´t return my objekt?
Dear RRRRRrrrrrrrrlist! I?ve got two lists which contain sets of DNA-sequences. They look something like this: List of 33 $ Cunonia_atrorubens : chr [1:247] "t" "t" "n" "t" ... $ Cunonia_balansae : chr [1:254] "t" "c" "c" "c" ... $ Cunonia_capensis : chr
2007 Sep 02
2
imap process consuming 100% CPU (Dovecot 1.0.3)
Hi, I have yet another problem with Dovecot: sometimes (rarely, maybe once every few days) one of the imap processes will 'hang', consuming all available CPU time. It does not seem to 'finish' in any reasonable amount of time (in one instance I waited a few days). This process will not even exit gracefully, it needs to be killed with 'kill -9 <PID>'. It has
2005 Jul 18
2
Assertion failure in mail-index-transaction.c
I just noticed one instance of this in the current CVS version: dovecot: Jul 18 15:25:48 Error: 5962 IMAP(mailuser): mbox sync: Expunged message reappeared in mailbox /mailhome/new/o/h/mailuser/mbox (UID 2834 < 2872) dovecot: Jul 18 15:25:48 Error: 5962 IMAP(mailuser): file mail-index-transaction.c: line 129 (mail_index_buffer_convert_to_uids): assertion failed: (*seq != 0) dovecot: Jul
2019 Jan 15
2
Cannot access other computers on LAN
Hello Julien, Am Mon, 14 Jan 2019 22:15:47 +0100 schrieb Julien dupont <marcelvierzon at gmail.com>: > ** Test 1 ** > On VPN_office I use 'tcpdump -npi any icmp and host 192.168.1.3' > When pinging 192.168.1.1 from client 1, with no success, I see no packet > passing. Sorry - the tcpdump command should end with "192.168.1.1" instead of
2012 Feb 20
1
counting characters starting point
I have three character strings represented below as seq1, seq2, and seq3. Each string has a reference character different from the other. Thus, for seq1, the reference character is U, seq2, S (3rd S from left where A is leftmost character) and for seq3 Y. seq1 = PQRTUWXYseq2 = AQSDSSDHRSseq3 = EEZYJKFFBHO I wish to generate a 3 by 26 matrix where 3 represent seq1, seq2, seq3 and 26 the letters of
2007 Dec 19
3
array addition
Hi suppose I have two arrays x1,x2 of dimensions a1,b1,c1 and a2,b2,c2 respectively. I want x = x1 "+" x2 with dimensions c(max(a1,a2), max(b1,b2),max (c1,c2)) with x[a,b,c] = x1[a1,b1,c1] + x2[a2,b2,c2] if a <=min(a1,a2) , b<=min (b1,b2), c<=min(c1,c2) and the other bits either x1 or x2 or zero according to whether the coordinates are "in range" for
2006 Jun 22
3
recent dovecot: assertion failed.
Hi, today I have built dovecot from cvs sources, and upgraded server from beta-7 to this newer version. Then i got problems with opening INBOX using thunderbird 1.5.0.2. The client says "Opening folder...", then, after about half a minute, blinking "connecting to the server" and returning to "Opening folder..." /var/log/maillog gets the messages: --- Jun 22
2019 Jan 15
2
Cannot access other computers on LAN
Hello Julien, Am Tue, 15 Jan 2019 09:30:23 +0100 schrieb Julien dupont <marcelvierzon at gmail.com>: > In that case I see: > IP 172.16.0.3 > 192.168.1.1: ICMP echo request, id2135, seq1, length 64 > IP 172.16.0.3 > 192.168.1.1: ICMP echo request, id2135, seq2, length 64 > IP 172.16.0.3 > 192.168.1.1: ICMP echo request, id2135, seq3, length 64 > > Packet goes
2012 Dec 06
2
[PATCH 0/2] Two build fixes for libldm
Two simple build fixes for libldm. Well, the first isn't a build fix as such, but a code improvement. Rich.
2007 Dec 09
1
List comprehensions for R
Below is code that introduces a list comprehension syntax into R, allowing expressions like: > .[ sin(x) ~ x <- (0:11)/11 ] [1] 0.00000000 0.09078392 0.18081808 0.26935891 0.35567516 0.43905397 [7] 0.51880673 0.59427479 0.66483486 0.72990422 0.78894546 0.84147098 > .[ .[x*y ~ x <- 0:3] ~ y <- 0:4] [,1] [,2] [,3] [,4] [,5] [1,] 0 0 0 0 0 [2,] 0 1 2
2008 Mar 10
2
dovecot 1.1.rc3 assertion failed at index_mailbox_set_recent_uid while deleting message with thunderbird.
To some users happens this assertion failure while deleting a message. dovecot: Mar 10 08:40:44 Panic: IMAP(user): file index-sync.c: line 39 (index_mailbox_set_recent_uid): assertion failed: (seq_range_exists (&ibox->recent_flags, uid)) dovecot: Mar 10 08:40:44 Error: IMAP(user): Raw backtrace: [see bleow] dovecot: Mar 10 08:40:44 Error: child 17683 (imap) killed with signal 6 And the
2012 Dec 13
3
subsetting time series
Hello, my series of dates look like [1] "2012-05-30 18:30:00 UTC" "2012-05-30 19:30:00 UTC" [3] "2012-05-30 20:30:00 UTC" "2012-05-30 21:30:00 UTC" [5] "2012-05-30 22:30:00 UTC" "2012-05-30 23:30:00 UTC" [7] "2012-05-31 00:30:00 UTC" "2012-05-31 01:30:00 UTC" [9] "2012-05-31 02:30:00 UTC"
2016 Dec 05
2
2.2.27 panic file mail-index-map.c: line 549 (mail_index_map_lookup_seq_range): assertion failed: (first_uid > 0)
Hi, Dec 5 20:24:31 dovecot: imap(xx at yy.zz,7ckWZu1CuZFVTILa): Fatal: master: service(imap): child 7292 killed with signal 6 (core dumped) Dec 5 20:24:32 dovecot: imap(xx at yy.zz,LnAlZu1COBVVTILa): Panic: file mail-index-map.c: line 549 (mail_index_map_lookup_seq_range): assertion failed: (first_uid > 0) Dec 5 20:24:32 dovecot: imap(xx at yy.zz,LnAlZu1COBVVTILa): Error: Raw backtrace:
2004 Oct 22
1
Vector and String
Hi everybody, I'm using a vector to strore some strings. I create a vector named seq2 : > seq2<-vector(length=0) I have a string named b > b [1] CATGGTAGGAATAC I put b in the vector > seq2<-c(seq2,b) Finally I edit seq2 > seq2 [1] "14760" My question is why I obtained a number (14760) when I add a string (CATGGTAGGAATAC) I have an idea : when I edit b, I see
2013 Feb 21
3
Ask for help: find corresponding elements between matrix
Dear R experts, I have two matrix (seq & mat) & I want to retrieve in a new matrix all the numbers from mat that =1 (corresponding to the same row/ column position) in seq, or all the numbers in mat that =-1 in seq. - Replace all the numbers with NA if it's not 1/-1 in seq. There are some "NA"s in seq. seq=matrix(c(1,-1,0,1,1,-1,0,0,-1,1,1,NA),3,4)
2018 Apr 29
2
Result of 'seq' doesn't use compact internal representation
> .Internal(inspect(1:10)) @300e4e8 13 INTSXP g0c0 [NAM(3)] 1 : 10 (compact) > .Internal(inspect(seq(1,10))) @3b6e1f8 13 INTSXP g0c4 [] (len=10, tl=0) 1,2,3,4,5,... > system.time(1:1e7) user system elapsed 0 0 0 > system.time(seq(1,1e7)) user system elapsed 0.05 0.00 0.04 It seems that result of function 'seq' doesn't use compact