similar to: Mixed models quantile regression

Dear R, I am using stepwise multiple glm to select a subset of variables using the step command. My question is how do you calculate the percentage variance for each parameter in the reduced model. An example of my code thus far is, fit<-glm(Abalone~offset(Area)+Sessile invertebrates+Bare rock+ NCA + Encrusting red algae, family = poisson ()) step(fit) fit1<-glm(Abalone~offset(Area)+Bare

Dear all I have made some lattice graphs (bwplot(dead ~ treat | group,...). 'group' is a factor with three levels (Artemia larvae, Abalone larvae and Abalone spat), and the result is a graph with three panels corresponding to the levels in 'group', ordered in alphabetical order from bottom to top, as expected. How does one re-order the order in which the levels of

Hi, Assuming that your dataset is similar to the one below: set.seed(25) dat1<- data.frame(Algae.Mass=sample(40:50,10,replace=TRUE),Seagrass.Mass=sample(30:70,10,replace=TRUE),Terrestrial.Mass=sample(80:100,10,replace=TRUE),Other.Mass=sample(40:60,10,replace=TRUE),Site.X.Treatment=rep(c("ALA1A","ALA1U"),each=5),stringsAsFactors=FALSE) library(reshape2)

Hi, I'm trying to set up R to run a simulation of two populations in which every 3.5 days, the initial value of one of the populations is reset to 1.5. I'm simulation an experiment we did in which we fed Daphnia populations twice a week with algae, so I want the initial value of the algal population to reset to 1.5 twice a week to simulate that feeding. I've use for loops and if/else

Hi all, I am applying a Presence/absence Generalized additive model to model the distribution of marine algae species in R. I have found that log transforming the environmental variables improves the explained deviance of the model considerably. While log transforming is common practice in GLM, I have been unable to find any papers where this is performed in a GAM. Im wondering whether this

Hello, we want to identify breakpoints (different phases) in environmental data, algae cell counts of three years with intervals between 7 and 30 days (N=40). We found that breakpoints(cells ~1) works great and identifies 5 very good breaks, however we are uncertain about these, because the data are unequally spaced. Is there a way to include the information about the measurement intervals,

Hi, my name is Luis, and I have a problem with a dataset. Its name is algae and count the collection of data in a lake and respective proliferation of algae. The parameters that it has are: "mxPH", "mnO2", "Cl", "NO3" "NH4", "oPO4", "PO4", "Chla" and "a1" all numerics. a1 - algae1 If I try to do SVM with

Hi, I am looking at the effect of allelochemicals produced by two freshwater macrophyte species on two different algal species at different days. I am comparing the effect of each macrophyte on each algae at each day. I received help from someone doing the LMEM (Linear mixed-effect models) and he told me to do ANOVA to analyse the LMEM. However, I received these feedback from my examinor; 1. An

Hi, I'm trying to analyse a hierachical design and am running into some trouble. Clearly I don't fully understand "Error" and I was hoping someone could set me straight. We measure percentage algal cover in each of 5 quadrats from each of 16 patches where 4 treatments are randomly allocated to a patch. First suppose patches are coded 1 to 16. then the following gives the

Dear colleagues, I have a data from a repeated measures design that I'm analysing through a mixed model. Nine independent sampling units (flasks with culture medium with algae) were randomly divided into 3 groups ("c", "t1", "t2"). There is no need for inclusion of the random effect of the intercept, because the nine sample units are homogeneous among each other

I have two questions for the group. One is very concrete, and is dangerously close to a "please do my homework" posting. The second follows from the first one but is more general. I would welcome the advice of experienced R users. As for the first one: I have a data frame with two variables X Y A, chris D, chris B, chris B, chris C, andrew E, andrew C, andrew B, beth

Dear all, i searched for some classification methods and I have no glue if i took the right once. My problem: I have a matrix with 17000 rows and 33 colums (genes and patients). The patients are grouped into 3 diseases. No I want to classify the patients and for sure i want to know which rows are more helpful for the classification than others. I tried SVM and random forest. Do you think this

Hello all, I'm kind of pulling my hair out over here. I'll preface this by saying that I'm using the latest version of Samba packaged in Debian Stretch as my domain controller. Currently, I'm trying to build an infrastructure where I can deploy a new virtual machine, then have it automatically join the domain so that users can log in to it without very much (if any)

Dear R users I am trying to obtain p-values for (quasi)poisson lmer models, using Markov-chain Monte Carlo sampling and the command summary. > > My problems is that p values derived from both these methods are totally different. My question is (1) there a bug in my code and > (2) How can I proceed, left with these uncertainties in the estimations of > the p-values? > > Below is

Can someone point me to the http:// location where I can import the key for 3.4 i386 Beth -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.caosity.org/pipermail/centos/attachments/20050228/02319731/attachment.htm

Look for consultant (for fee is acceptable) to provide step-by-step setup of DNS (forward & reverse) through the graphical interface of CentOS. Current setup is qmail server on static ip being nat''d through router. Need to setup for full DNS including PTR. Please contact - Beth Curotto American Business Networking, Inc 800-818-3244 -------------- next part -------------- An HTML

System = CentOS / Apache 2.0 / HTML files location = /var/www/html Nat'd IP - ports 80, 20, 21 already opened & routed to internal ip. I desperately need the quick & dirty solution. I need a setup where one user can ftp from another desktop (windows) to upload new website files. I currently have CuteFTP, but will use anything needed at this point. I need to try to test this today.

Hi all, In Tibshirani's PNAS paper about nearest shrunken centroid analysis of microarrays (PNAS vol 99:6567), they used cross validation to choose the amount of shrinkage used in the model, and then test the performance of the model with the cross-validated shrinkage in separate independent testing set. If I don't have the luxury of having independent testing set, can I just use the

We''ve run into an issue with an 8 node x3950 where xm info is showing only 6 nodes. I''ve traced the problem to the clip_to_limit function in arch/x86/e820.c. #ifdef __x86_64__ clip_to_limit((uint64_t)(MACH2PHYS_COMPAT_VIRT_END - __HYPERVISOR_COMPAT_VIRT_START) << 10, "Only the first %u GB of the physical memory map

I have just set up a box - HOSTNAME mail.abni.com It has Qmail setup. I also want this box to serve as the host for our website - abni.com Can someone point me in the direction of where to go next. I am unsure if HOSTNAME will be a problem as a web server. Currently I have loaded a html doc in - /var/www/html, but I had to load from cd directly on this machine. Is is neccessary to setup ftp