Displaying 20 results from an estimated 3000 matches similar to: "problem getting multiple densityplots on one page"
2012 Feb 22
2
Several densityplots in single figure
Hi,
I have created two separate overlapping density plots- see example code
below.
What I wish now to do is combine them into one figure where they sit side
by side.
Any help would be great!
many thanks in advance, josh.
#####################
thedataA <- data.frame(x1=rnorm(100,1,1),x2=rnorm(100,3,1)) #create data
thedataA.m<-melt(thedataA)
densityplot(~value, thedataA.m,
2011 Jul 27
1
How to adjust y-axis when using panel.densityplot within histogram function
Hi
I would like to superimpose group-specific densityplots on top of an overall
histogram using panel.histogram and panel.densityplot. Furthermore, I would
like to automatically adjust the range of the y-axis to take into account
the ranges of both histogram and densityplot. This last part is where I have
a problem. I believe using the prepanel argument of histogram is typically
the way to go,
2006 Jul 07
1
densityplot and panel.groups
I am trying to plot multiple densityplots on each panel, and using
panel.groups to do some additional plotting (not included in the
example) as in this example.
library(lattice)
thedata <- data.frame(x=rnorm(1200),class=rep(1:3,each=200,times=2),
group=rep(1:2,each=100,times=6))
densityplot(~x | class,groups=group,
xlab='x',
panel.groups =
2007 Sep 20
2
referencing packages?
Hi
I know how to referenc R in a scientific paper - but is there a
standardised way to reference packages?
Thanks
Rainer
--
NEW EMAIL ADDRESS AND ADDRESS:
Rainer.Krug at uct.ac.za
RKrug at sun.ac.za WILL BE DISCONTINUED END OF MARCH
Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation
Biology (UCT)
Plant Conservation Unit
Department of Botany
University of Cape Town
Rondebosch 7701
2007 Oct 01
4
Concatenating one character vector into one string
Hi
I am sure this is simple - but how can I convert one charecter vector
into one string?
example:
x <- c("This ", "is ", "one ", "sentence.")
should become
"This is one entence"
Thanks
Rainer
--
NEW EMAIL ADDRESS AND ADDRESS:
Rainer.Krug at uct.ac.za
RKrug at sun.ac.za WILL BE DISCONTINUED END OF MARCH
Rainer M. Krug, Dipl. Phys.
2008 Mar 14
2
Selecting elements in vector
Hi
Consider the following code
> x <- rep(1:13, 13)
> y <- 1:3
I want to select all elements in x which are equal to 1, 2 or 3.
I know that I could use
> sel <- x==y[1] | x==y[2] | x==y[3]
> x[sel]
to obtain the values, but in my analysis, the y-vector is thousands of
elements long.
Is there any way, that I can do that easily?
Thanks
Rainer
--
Rainer M. Krug, Dipl.
2007 Oct 24
1
Rotated viewports in Grid
Hi all,
I'm trying to generate a plot containing a scatterplot, with marginal
densityplots for x and y.
However, when I try to generate a vertical densityplot, I get the
message "warning: can't clip to rotated viewport", and nothing shows
up. I'm probably misunderstanding how viewports are meant to be used,
so if someone could give me a hint, I'd be most grateful.
my
2007 Aug 16
6
several plots on several pages
Hi
> version
_
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 2
minor 5.1
year 2007
month 06
day 27
svn rev 42083
language R
version.string R version 2.5.1 (2007-06-27)
I want to create a pdf withe three graphs on a page and with two pages:
2008 Feb 13
3
indices of rows containing one or more elements >0
Hi,
Given test <- matrix(c(0,2,0,1,3,5), 3,2)
> test[test>0]
[1] 2 1 3 5
These are values >0
> which(test>0)
[1] 2 4 5 6
These are array indices of those values >0
> which(apply(test>0, 1, all))
[1] 2
This gives the row whose elements are all >0
I can't seem to get indices of rows containing one or more elements >0
[[alternative HTML version deleted]]
2010 Dec 15
1
Problems drawing a colored 'rug' in the Lattice 'densityplot'
Hi All,
I'm trying to add a 'rug' representation of my data to a plot created
with densityplot(). While I can do this in the simple case, I can't do
it properly when I include the "groups" argument. I have an example
below. I am running a reasonably new version of R.
print(sessionInfo())
R version 2.12.0 Patched (2010-11-07 r53537)
Platform: i686-pc-linux-gnu
2006 Jun 26
1
How to generate a figure using par( ) with some densityplot( )'s
Hi Dear R users,
For a pair plotting, usaully we use par( ) function. Apparently it does not work anywhere. I want to have 3 plots in a single figure, like this:
par(mfrow=c(3,1))
densityplot( a)
densityplot(b)
densityplot(c)
But it does not work. How is it possible to have such a figure with densityplot( ) in a single figure?
So many thanks for any help.
Amir Safari
2007 Aug 21
1
small issue with densityplot
Hi folks,
This is really minor but to someone not familiar with the various tentacles of the lmer package it could be really annoying. I was trying to plot the posterior density of the fixed effect parameters of a lmer model,
> hr.mcmc = mcmcsamp(hr.lmer, n=50000)
> densityplot(hr.mcmc, plot.points=F)
There is this error,
"Error in densityplot(hr.mcmc, plot.points = F) :
no
2008 Apr 16
1
What objects will save.image saves ? And how to specify objects to be saved..
Hi,
I have a R script that loads an image R.data, does some operations, then
save to the R.data again. Suppose I have done some computation before
loading the R script, will all the objects before the R script execution be
saved to R.data ? If yes, how can I specify save.image to save only those
objects created in the R script ?
Thanks
Stanley
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2008 Jan 31
1
Bug with hist() ?
Hi,
Is this a bug from hist() ? The total density is greater than 1.
> test
[1] 0.05077802 -0.50585520 -0.98053648 -0.35513059 0.86767129 0.61736097
[7] 0.14264062 0.26243841 -0.41477782 0.64172618 0.87230953 -0.62570629
[13] 0.43596467 -0.93214106 -0.26781599
> h <- hist(test, freq = FALSE, main="Histogram of correlation", ylab =
"Frequency", xlab =
2008 Feb 14
1
How to check cy5 and cy3 values were lowess normalized
Hi,
I have some microarray data, cy5 and cy3 values are in log2. Is there a
way to check they have undergone lowess normalization ?
Thanks
Stanley
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2008 Aug 26
2
awkward behavior with densityplot function
Hi,
I have the following script:
---- t.R ---
grafica <- function() {
v <- read.csv('preprocessed/komolongma.ece.uprm.edu.active',sep=',')
x <- as.ts(v$active)
bitmap(file="output.png")
densityplot(~x,col='blue',main='Density Plot')
dev.off()
}
grafica()
---- t.R ---
When I "sourced" it from R prompt, it quietly runs.
2008 Jul 09
1
version problems of rkward in ubuntu hardy repository
Hi
I tried to install rkward under ubuntu hardy heron, but it tried to
use the one from the cran repository which was newer, but it did not
install. To be able to install rkward, I had to disable the cran
repository, install rkward, lock it's version and enable the
repository again.
I have the feeling, that the dependencies are not correct (it is
looking for libqt4GUI, but I have a
2012 Apr 11
1
Lattice densityplot with semitransparent filled regions
Hello,
I'm doing some graphics for a paper and a need customize such with filled
region above the density curve. My attempts I get something very near what
I need, but I don't solve the problem of use semitransparent filled. Below
a minimal reproducible code. Someone has any idea?
require(lattice)
# toy data...
dt <- expand.grid(A=1:2, B=1:3, y=1:50)
dt$y <- rnorm(nrow(dt), dt$B,
2007 May 28
1
Where to find "nprq"?
Hi
I am trying to install the package "pheno", but it needs the package
"nprq" by Roger Koenker et al. which I can I find this package? It does
not seem to be on CRAN and googling also doesn't give me an URL - is it
still somewhere available?
Thanks,
Rainer
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NEW EMAIL ADDRESS AND ADDRESS:
Rainer.Krug at uct.ac.za
RKrug at sun.ac.za WILL BE DISCONTINUED END OF
2008 Mar 07
1
How to navigate in layout() created graph?
Hi
I created a complex layout with using layout() and it looks exactly as
I need it. But I don't want to print in the order in which the
subfigure are numbered, but in a different order.
How can I navigate in the layout so that I can specify the subfigure
in which to plot?
At the moment I am using a function which is converting the number to
mfg parameter for par, but it does not seem to