similar to: stochastic growth rate (package biopop)

Hello, I am trying to create multiple matrices (to run a PVA) but can't import all of them from a .csv without the numbers treated as labels and not factors. I can enter the matrix slowly: Site05_96 <- matrix(c(0.07,0,0.03,0.00,NA,0.00, 0.09,0.166666667,0.31,0.42,NA,0.00, 0.00,0,0.00,0.00,NA,0.00, 0.00,0,0.00,0.00,NA,0.00,

Hello R users, I am trying to calculate the stochastic lambda for a published matrix population model using the popbio package. Unfortunately, I have been unable to match the published results. Can anyone tell me whether this is due to slightly different methods being used, or have I gone wrong somewhere in my code? Could the answer be as simple as comparing deterministic lambdas to

Dear R-users, I would like to calculate elasticities and sensitivities of each parameters involved in the following transition matrix: A <- matrix(c( sigma*s0*f1, sigma*s0*f2, s, v ), nrow=2, byrow=TRUE,dimnames=list(stage,stage)) The command "eigen.analysis" avaliable in package "popbio" provides sensibility matrix and elasticity matrix

2017-10-10 8:25 GMT+02:00 Karan Sandha <ksandha at redhat.com>: > Hi Gandalf, > > We have multiple tuning to do for small-files which decrease the time for > negative lookups , meta-data caching, parallel readdir. Bumping the server > and client event threads will help you out in increasing the small file > performance. > > gluster v set <vol-name> group

Can you please let know if there are any packages for stochastic linear programming (SLP) in R? Thanks in advance Sudhakar Achath

First time user, so sorry if I don't understand protocol.. Anyway, I have created a data frame consisting of pearson's R values at various x and y coordinates and then plotted this using filled.contour. My data is similar to fMRI data except that it is a surface map reconstructed from histological sections. I like the results but would like to know how contours were detected. Google search

To All How does one get a list of functions from a loaded package so that one can then get the appropriate help for each of the functions. Currently my method is based on a lot of trial-and-error. Here's an example of what I mean... >From this forum I learn that an interesting package called "multtest" exists on Bioconductor. I then use R Console's "Packages" --

I just tried setting: performance.parallel-readdir on features.cache-invalidation on features.cache-invalidation-timeout 600 performance.stat-prefetch performance.cache-invalidation performance.md-cache-timeout 600 network.inode-lru-limit 50000 performance.cache-invalidation on and clients could not see their files with ls when accessing via a fuse mount. The files and directories were there,

So I have to use this table of min, max, and mean temps for certain years http://www.stat.berkeley.edu/classes/s133/data/january.tab. I am supposed to figure out which year had the hottest January and which had the coldest. But I dont know how to! Nick Manginelli [[alternative HTML version deleted]]

Full_Name: Dieter Kadelka Version: 2.9.0 OS: Linux Submission from: (NULL) (129.13.115.98) Hallo, my system is Linux mspcka3 2.6.5-7.276-default #1 Mon Jul 24 10:45:31 UTC 2006 i686 GNU/Linux with gcc-4.3.3 Installation of R-2.9.0 fails, R-2.8.1 is o.k. After configure make I get ... WARNING: ignoring environment value of R_HOME >>> Building/Updating help pages for package

Hello, I am trying to construct two matrices, F and V, composed of partial derivatives and then find the eigenvalues of F*Inverse(V). I have the following equations in ryacas notation: > library(Ryacas) > FIh <- Expr("betah*Sh*Iv") > FIv <- Expr("betav*Sv*Ih") > VIh <- Expr("(muh + gamma)*Ih") > VIv <- Expr("muv*Iv") I

Dear helpers, I wrote a code which estimates a multi-equation model with generalized least squares (GLS). I can use GLS because I know the covariance matrix of the residuals a priori. However, it is a bit slow and I wonder if anybody would be able to point out a way to make it faster (it is part of a bigger code and needs to run several times). Any suggestion would be greatly appreciated. Carlo

Hello, I'm in need of running a PVA and want to load {popbio}. However, I can't find it. I can't see where or how to load it. I have added repositories and changed the CRAN mirror site. I see {polynom} and {popgen} but no {popbio} between. What am I doing wrong? Thanks, Michelle [[alternative HTML version deleted]]

Let's say I have a data.frame like A B C TS other columns 1 1 1 12345 1 1 1 56789 1 2 1 23456 1 2 2 23457 2 4 7 23458 2 4 7 34567 2 4 7 45678 and I want the last row for each unique combination of A/B/C, where by "last" I mean greatest TS. A B C TS other columns 1 1 1 56789 1 2 1 23456 1 2 2 23457 2 4 7 45678 I did this simply in SAS: proc sort data=DF; by A B C descending TS

Hello All. I am using the image2 plot function in the popbio package to create 6 elasticity analyses. I am trying to reduce the number of significant digits that displays -- from 3 digits to 2. I tried rounding my original matrices, but one is comprised primarily of zeros, and the cut / breaks options returns an error message. (see code and error message below) Here are the elasticity values

Sale plano sí. Ya se que sin tener los datos y el código es un poco difícil, pero es que mis datos ocupan mucho, es imposible. Seguiré mirando por internet. Muchas gracias Rubén. Un saludo, > To: r-help-es en r-project.org > From: rubenfcasal en gmail.com > Date: Thu, 6 Aug 2015 14:21:47 +0200 > Subject: Re: [R-es] Duda interpolación (package ' gstat ') > > Hola

Hi all!!! How can I create a legend to my plot that automatically reads the values from two vectors? betav<-c(0.78,0.94,0.88,0.41,0.59,4.68) etav<-c(235.6,59.5,31.2,8.7,3.2,1174) I want my legend to show 6 lines beta(in greeks)=0.78,eta(in greeks)=235.6 beta(in greeks)=0.94,eta(in greeks)=6.59 .... beta(in greeks)=4.68,eta(in greeks)=1174 I know how to do it "by hand" but I have

Hello, I am trying to use the projection.matrix( ) function and am following the example given. I have my data formatted very similar to the test.census example. > str(AsMi05mat) `data.frame': 1854 obs. of 6 variables: $ Tag : num 501 502 503 504 505 506 507 508 509 510 ... $ Year : int 1995 1995 1995 1995 1995 1995 1995 1995 1995 1995 ... $ Length : num 34

Hello, I am running the plot from countCDFxt (popbio). I would like to report the y-axis as a percent instead of the log scale (e^01...). I can add an axis with axis(2, 0:1, line =2) but I'm having trouble understanding how to assign the tic marks (with 'at ='). I'd like to tell it to make tics with the percent value (or decimal if that's my only option) at the equivalent of

Hello all. I'm new to asterisk and have been using and testing it for about a week now. My initial hope has been to use it as a sip<->h323 gateway to tie SIP & H323 based ip phones together with my Cisco AS5300 and Lucent MaxTNT/MVAM networks. I am currently running Asterisk 0.5.0 under Redhat 9 on a single PIII 800 with 256megs RAM. I have tried a couple CVS version from the past