similar to: installing and using a package

Hi, after updating to 2.1 (see below) I am no longer able to install all R packages as mentioned at <http://support.stat.ucla.edu/view.php?supportid=30>. After finishing the download, I received the following error: [...] trying URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.1/xgobi_1.2- 13.zip' Content type 'application/zip' length 102623 bytes opened

Here is an example given from ?yags library(methods) data(stackloss) Y1 <- yags(stack.loss~Air.Flow,id=1:21, data=stackloss) How can I access parts of the output. I tried: > str(Y1) Formal class 'yagsResult' [package "yags"] with 25 slots ..@ coefficients : num [1:2] -44.13 1.02 ..@ coefnames : chr(0) > Y1$coefnames Error in Y1$coefnames : $

Full_Name: Markus Jantti Version: 1.5.1 OS: GNU/Linux Unstable (Sid) Submission from: (NULL) (193.166.59.44) I was trying to get the package yags 3.20 by Vince Carey <stvjc@channing.harvard.edu> to run, but - after successfull installation -- loading the library failed with the message > library(yags) Error in stop(paste("Duplicated slot names: ", paste(slots[duplicated(slo

Dear R-helpers, I hope someone can help me with the following problem: I derived a variable from many others and produced data.frame: toktempo When I look at the variable name I get: names(toktempo) [1] "otok.V5" But I want the variable name to be Tempo so I googled around to find info about renaming variables. I found a webpage which seemed to indicate to me that there was a

I have included data at the bottom of this email. It can be read in by highlighting the data and then using this command: dat <- read.table("clipboard", header = TRUE,sep="\t") I can obtain solutions with both of these: library(gee) fit.gee<-gee(score ~ chem + time, id=id, family=gaussian,corstr="exchangeable",data=dat) and library(yags) fit.yags <-

Hello All, I'm actually the system administrator of a UNIX system where several users use R version 2.6.0. I have a user who is trying to use the SURVEY package, and when he does, he gets the message: survey' is not a valid package -- installed < 2.0.0? When I run the library() command, I get (see below): Anything that is listed as ** No title available (pre-2.0.0 install?) **

I just installed R 2.12.1, and when I went to run a few old programs with it, nothing worked. I got a ton of error messages saying such and such package was built before R 2.10.0 and needed to be reinstalled. These were not just warning messages, but error messages that prevent the programs from running when they were running just fine with R 2.10.1 For some of those packages, such as deSolve, I

Readers, Using version 251 I tried the following command: lm(y~a+b,data=datafile) Resulting in, inter alia: ... coefficients (intercept) a 1.2 3.4 Packages installed: acepack ace() and avas() for selecting regression transformations adlift An adaptive lifting scheme algorithm akima Interpolation of irregularly spaced

I need capabilities, for my data analysis, like the Pinheiro & Bates S-Plus/R package nlme() but with binomial family and logit link. I need multiple crossed, possibly interacting fixed effects (age cohort of twin when entered study, sex of twin, sampling method used to acquire twin pair, and twin zygosity), a couple of random effects other than the cluster variable, and the ability to

When I type library() to see what is installed the following list in RED comes up. Packages in library '/home/jason/R/i686-pc-linux-gnu-library/2.13': abind Combine multi-dimensional arrays aplpack Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and some slider functions biglm bounded memory linear and

Hello R-users: I am using "yags" for fitting GEE which is giving me the same result as "Proc GENMOD". Now I have couple of questions related to yags output. (By the way, someone told me to run the geeglm for the same analysis and I did run but did not get the same result as of genmod and don't know how to correct the geeglm codes so that all three will be same!)

Hello, Is it possible to derive Pan's QIC (2001 Biometrics 57:120) from either a fitted gee() object in the gee package or from a geese() fit in the geepack package? If so, would anyone be kind enough to provide me with code to do so? I realize that QIC is part of the output from yags() but I would like to use one of the other functions. Thanks. Richard

Hi , I use library(gee),library(geepack),library(yags) perform GEE data analysis , but all of them cannot do variable selection! Both step and stepAIC can do variable selection based on AIC criterion under linear regression and glm, but they cannot work when model is based on GEE. I want to ask whether any variable selection function or package under GEE model avaliable now? Thanks! Best,

Hi A quick question. Standard errors reported by gee/yags differs from the ones in geeglm (geepack). require(gee) require(geepack) require(yags) mm <- gee(breaks ~ tension, id=wool, data=warpbreaks, corstr="exchangeable") mm2 <- geeglm(breaks ~ tension, id=wool, data=warpbreaks, corstr="exchangeable", std.err = "san.se") mm3 <- yags(breaks ~

I have read in a file (call it myData). The actual file is about 3000x30,000 columns and object.size() says myData takes: > 737910472/(1024^2) [1] 703.7263 Unfortunately, my program ends up using 40GB as indicated by maxvmem on Unix, which causes my department's cluster to stop working. Perhaps, I have some copying going on that I cannot find. I have created an example below that mimics

markus.jantti@iki.fi wrote: > > Full_Name: Markus Jantti > Version: 1.5.1 > OS: GNU/Linux Unstable (Sid) > Submission from: (NULL) (193.166.59.44) > > I was trying to get the package yags 3.20 by Vince Carey > <stvjc@channing.harvard.edu> > to run, but - after successfull installation -- loading the library failed with > the > message > > >

Dear R users, I search the R archives and noted that the same problem has been posted but without solution. I know there IS instructions by the author of yags, but I just couldn't figured out. I know gee and geepack can also perform generalized estimating equation, but the reason why I need yags is I want to perform a Small Sample Adjustments by Michael P. Fay and Barry I. Graubard in

Dear R-ers, I am just a simple 'end-user' of R and am trying to analyse data with a binary response variable (dead or alive) in relation to weight and sex (of young birds). As some of the birds have the same biological mother, I am using mixed models with the identity of the mother as a random factor. (please, Mick Crawley, when are you going to write a chapter on mixed models with binary

Dear R-ers, I am just a simple 'end-user' of R and am trying to analyse data with a binary response variable (dead or alive) in relation to weight and sex (of young birds). As some of the birds have the same biological mother, I am using mixed models with the identity of the mother as a random factor. (please, Mick Crawley, when are you going to write a chapter on mixed models with binary

Hi, I'm new to R and have a question which seems like it should be easy. I loaded the R port of my boot library and installed it. All of the functions and help files are available but I can't seem to access the data. The data directory was created and contains files with the extension .rda. I tried to use the data() function but I get > data(city) Error: restore file corrupted -- no