Displaying 20 results from an estimated 600 matches similar to: "FW: cgh package"
2007 Feb 13
2
anyone has C++ STL classes stability issue if used with R
Hello,
is there any one who uses C++ STL classes when programming shared libs
for R and has had any problems with STL?
In the very simple example below I am constantly getting segfaults when
trying to populate the queue. The segfault occurs at what looks like a
random index in the loop when pushing another element to the queue.
Reproduced on 4 machines. Object x is an Image as in EBImage,
2008 Dec 12
1
Support vector model?
Dear All,
Apologies for sending this email to both list, but at this point I'm not
sure which one could help me the most.
I have 4 sets of data, 1 test and 3 different sets of controls.
The measurements are binary, with a matrix of 0 and 1
I'm measuring across time (rows, ~815) the behaviour of organelles in
the cell by microscopy in response to different stimuli (several
measurements
2019 Oct 21
2
How to create vector pointer type?
Hello,
Say the original type is Integer i16*, I want to create a v16i16* type to replace it.
static Type *getVectorPtr(Type *Ty) {
PointerType *PointerTy = dyn_cast<PointerType>(Ty);
assert(PointerTy && "PointerType expected");
unsigned addSpace = PointerTy->getAddressSpace();
2009 Nov 20
1
how to specify the order of panels with xyplot
> chromosomes
id refseq name length
1 0 NC_000001.9 Homo sapiens chromosome 1 247249719
2 1 NC_000002.10 Homo sapiens chromosome 2 242951149
3 2 NC_000003.10 Homo sapiens chromosome 3 199501827
4 3 NC_000004.10 Homo sapiens chromosome 4 191273063
5 4 NC_000005.8 Homo sapiens chromosome 5 180857866
6 5 NC_000006.10 Homo sapiens chromosome 6
2012 Sep 10
3
plot: x and y chromosomes are missing
Hello,
I have a list with gene names, fold changes (=expression level) and
chromosomes.
Names fold change chromosome
hz 1.5 2
If I plot fold change versus chromosome (or vice versa):
plot (ch, fc)
I see only the chromosomes with numbers but not those with letter (x and
y). What can I do?
A second question:
How can I add a single line in that plot at a certain
1998 Apr 01
1
line plot with NA
I have the following data:
intens<-c(28000,72000,120000,150000,180000,260000,310000) #Td
peakcb<-c(1.2,2.5,2.7,3.7,5.6,6.2,6.8) #presses/s
peakan<-c(0.5,3.7,5.1,5.8,7.4,NA,8.4)
(See why I am using NA? I can work around this problem by using
intensityan and intensitycb)
Now do a plot of peakan:
plot(intensity, peakan, pch=10,type="b")
The plot skips the point (260000,NA),
2008 Jun 02
1
Help : R-packages : Problems loading package fSeries
Hi.
I am trying to load the package fSeries, in order to load the package
fGarch after.
However, it says the following message.
> local({pkg <- select.list(sort(.packages(all.available = TRUE)))
+ if(nchar(pkg)) library(pkg, character.only=TRUE)})
Loading required package: fBasics (Error : ... infinite recursion)
Loading required package: fImport
Loading required package: fSeries
Loading
2010 Jun 01
5
Help barplots
Dear All,
I am newbie to R, and I wanted to plot a barplots with R and in such a way
that It will also show me position which I can plot on the bar line.
Here is my code that I am using to plot,
> chromosome <- c(40.2, 35.6, 36.1, 29.6, 31, 29.6, 31, 29.4, 28.2, 23, 23,
28.2)
>barplot (chromosome, col="purple", xlab="Oryza sativa Chromosomes", border
= NA, space =
2019 Nov 25
2
Tablegen PAT limitation?
You are welcome.
I changed the pattern, the same old error pop up again, crash in the same place.
Type set is empty for each HW mode:
possible type contradiction in the pattern below (use -print-records with llvm-tblgen to see all expanded records).
vtInt: (vt:{ *:[Other] })
UNREACHABLE executed at /home/nancy/work/rpp_clang/llvm/utils/TableGen/CodeGenDAGPatterns.cpp:824!
2004 Aug 06
7
(no subject)
Hi,
I am the current webmaster at WUML (www.wuml.org) a college radio
station. We are looking to purchase a new web cast server which we
are planning will run IceCast, but it is a little unclear on the
system requirements that IceCast requires.
I read somewhere that IceCast can run on as little as a 486 with 32mb
of ram but that sounded like those specs were for streaming mp3s saved
on that
2009 Dec 04
1
Lattice : Help with changing the labels of x-axis in respective panels
Dear R-Helpers,
I am not very experienced in using lattice and I am still in the learning
stage
I have a data set which looks like this: (I have deleted a few lines in
order to save space)
Chromosome marker Marker.Name Distance
1 1 1 PeMm261 0.0000
2 1 2 Xtxp8 10.1013
..
20 1 20 EbMi148 210.3099
21 1 21 Xtxp25
2019 Nov 22
2
Tablegen PAT limitation?
def STOREbos { // InstructionEncoding Instruction RPPInst RPPInstMMEMrr
field bits<32> Inst = { 0, 0, 0, 1, rs1{2}, rs1{1}, rs1{0}, index{0}, 0, 0, 0, 1, 0, rbase{3}, rbase{2}, rbase{1}, rbase{0}, rbase{4}, roffset{4}, roffset{3}, roffset{2}, roffset{1}, roffset{0}, 0, 0, 0, 0, 0, 0, 0, 0, 0 };
field bits<32> SoftFail = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
2003 Jan 16
1
graphics
Dear R community,
I need to plot the results of some simulations I did using QTL
Cartographer. I am plotting LOD scores over three chromosomes. The three
plot have to be one next to the other.
The procedure I am using is:
par(mfrow=c(1,3))
plot(x$x, x$y, ylim=c(0,35), type="l", col="blue", las=1, xaxs="i",
yaxs="i", xlab="X Chromosome",
2011 Nov 02
2
Sum with condition
I guess my problem is simple for most of you but I am new with R and I need
some help,
I have a dataframe :
CELLCD AreaProtected
8928 52.39389
8928 41.91511
8929 21.21975
8929 63.65925
8930 26.08547
8930 14.04602
I wouldlike to sum the AreaProtected if it is the same CELLCD in another
column :
CELLCD AreaProtected SumAreaProtected
8928
2011 Aug 10
2
Loops for repetitive task
Hello,
I have an R script that I use as a template to perform a task for multiple
files (in this case, multiple chromosomes).
What I would like to do is to utilize a simple loop to parse through each
chromosome number so that I don't have to type the same code over and over
again in the R console.
I've tried using:
for(i in 1:22){
etc..
}
and replacing each chromosome number with
2019 Nov 21
2
Tablegen PAT limitation?
Hi Krzysztof,
Today I try it on llvm9.0.0 version.
def bos : RPPInstMMEMrr<OPC_STORE,
(outs), (ins MGPR:$rs1, SGPR32:$rbase, MGPR:$roffset, uimm2:$rshift),
!strconcat(opcodestr, ""), "$rs1,
2009 Jan 15
3
How to create a chromosome location map by locus ID
Hi,
I'm trying to make a chromosomal map in R by using the locus. I have a list
of genes and their locus, and I want to visualise that so you can see if
there are multiple genes on a specific place on a chromosome. A example of
what I more or less want is below:
http://www.nabble.com/file/p21474206/untitled.JPG untitled.JPG
The genes and locus are here:
2019 Nov 20
4
Tablegen PAT limitation?
Hi,
The full trace stack:
Type set is empty for each HW mode:
possible type contradiction in the pattern below (use -print-records with llvm-tblgen to see all expanded records).
vtInt: (vt:{ *:[Other] })
UNREACHABLE executed at /home/nancy/work/rpp_clang/llvm/utils/TableGen/CodeGenDAGPatterns.cpp:824!
[ 85%] Building X86GenEVEX2VEXTables.inc...
#0 0x000000000081b9b5
2006 Apr 12
1
Cisco 7960 won't dial (sccp)
I'm trying to setup a couple of Cisco 7960's in asterisk. I have asterisk
working fine for sip clients, and can call the 7960's just fine, but
I can't seem to dial out on them.
As soon as I enter the first digit, the phone attempts to dial it without
waiting for the rest. I've changed timeout settings, etc but can't seem to
get it to work. Any ideas?
Asterisk
2004 Aug 06
1
questions related to ploting in R
Dear all.
I need to draw a scatter plot of 23 chromosome copy numbers (y axes) against
chromosome and physical location within each chromosome in one plot. The
data matrix looks as below:
chr location copy_num
1 118345 1.320118
1 3776202 1.133879
1 4798845 0.989997
1 5350951 1.100967
. more data here
.
.
2 118345 2.459119
2 157739 1.915919
2 1530065 1.924372
2