similar to: cyclic dependency error

Hi Sir, I want to install the package "cluster" in R language. I could be installing, but I cant load that package.. I have faced the following warning in installing time.. Warning: cannot remove prior installation of package 'cluster' So, I tried to update the package, but again I faced the following issue update.packages() --- Please select a CRAN mirror for use in this

Re-sending, since I forgot to include the list, sorry. I'm including r-package-devel too this time, as it seems more appropriate for this list. El 22 ene. 2018 10:11, "I?aki ?car" <i.ucar86 at gmail.com> escribi?: > > > El 22 ene. 2018 8:12, "Ulrich Bodenhofer" <bodenhofer at bioinf.jku.at> > escribi?: > > Dear colleagues, dear members of

On 01/22/2018 08:40 AM, Ulrich Bodenhofer wrote: > Thanks a lot, I?aki, this is a perfect solution! I already implemented > it and it works great. I'll wait for 2 more days before I submit the > revised package to CRAN - in order to give others to comment on it. It's very easy for 'pictures of code' (unevaluated code chunks in vignettes) to drift from the actual

Hi, I am confused (a normal state for me) about the State-Of-The-Art Story API to use. examples/calculator.rb has one syntax, the Blogs have another Syntax, so do the various tutorials. I realize that Stories are ongoing work, but it would be nice if there were something I could refer to to make sure that I am not using a syntax that will soon be deprecated, and that I am doing "what is

Dear Colegues: I have tried to reach Ray Brownrigg, Ray.Brownrigg at mcs.vuw.ac.nz but my mails have turned back with the following comment did not reach the following recipient(s): Brownrigg at mcs.vuw.ac.nz on Mon, 31 Jul 2006 12:52:39 +0100 There is no such account in the address =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=

Im having some issues with Samba that I'm not sure where to go from, and have not been able to figure it out. Im converting a Windows NT machine to a Linux machine for file sharing. Ive been able to get printer sharing working properly, as well as public directories/files which is great. Im using Samba-2.0.5a (will upgrade to 2.0.6 shortly) and am having issues with the following: 1) The

Jon E. Mitchiner wrote: [snip ...] >1) The inability to log into my own private directory with password. It >keeps on prompting me for a username and password. Even doing smbclient >``machinename\username` -U username comes up with an "tree connect failed: >ERRSRV - ERRbadpw" from either the unix or Windows NT machine. log.smb is >showing the following:

Basic question: Is it correct to assume that when using cutree to set the # clusters (say k=4), cutree determines the clusters by the largest distances among all potential clusters? I've read the R help for cutree and am using it to define the number of groups to obtain Dunn Index scores (using clValid library) for cluster analysis (using Euclidean Distance and Ward's method) More

Dear colleagues, dear members of the R Core Team, This was an issue raised by Prof. Brian Ripley and sent privately to all developers of CRAN packages that suggest Bioconductor packages (see original message below). As mentioned in my message enclosed below, it was easy for me to fix the error in examples (new version not submitted to CRAN yet), but it might turn into a major effort for the

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Thanks a lot, I?aki, this is a perfect solution! I already implemented it and it works great. I'll wait for 2 more days before I submit the revised package to CRAN - in order to give others to comment on it. Best regards, Ulrich On 01/22/2018 10:16 AM, I?aki ?car wrote: > Re-sending, since I forgot to include the list, sorry. I'm including > r-package-devel too this time, as it

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

Dear all, I'm a bit stunned by the behaviour of a gam model using cyclic P-spline smoothers. I cannot provide the data, as I have about 61.000 observations from a time series. I use the following model : testgam <- gam(NO~s(x)+s(y,bs="cs")+s(DD,bs="cs")+s(TT),data=Final) The problem lies with the cyclic smoother I use for seasonal trends. The variable Final$y is a

Hi R users, I am developing two packages. Each package uses some functions from the other package. Now when I define these dependencies in the NAMESPACE file (via importFrom(XXXX,function1,....)), i get this error (when building one package): cyclic namespace dependency detected when loading 'XXXXXX', already loading ?YYYYYYY?, ?XXXXXXXXX? Is there any way to prevent this error?

Hi all, I would like to reference a resource twice, with different configurations. At the moment I do this: service { "service1": ensure => running, enable => true, require => Exec["some stuff"] } exec { "some stuff": command => "/etc/init.d/service1 stop; do some stuff required for service1", unless => "find out if already

Hello, I'm facing some problems while building LLVM 2.8 shared libraries from source using CMake: cmake -DBUILD_SHARED_LIBS=true .. This is the output error: CMake Error: The inter-target dependency graph contains the following strongly connected component (cycle): "LLVMARMCodeGen" of type SHARED_LIBRARY depends on "LLVMARMAsmPrinter"

I'm having trouble installing my quantreg package on R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) Seems odd since the CRAN version seems to be fine, but I'm seeing after compiling of the i386 and x86-64 versions and installing the

--- Pavel Øezníèek <pavel.reznicek@wo.cz> wrote: > I have made some steps and it helped me a bit: Wine > already does run! I'm glad for you! Closing the bug. > The most important thing is that I have configured > Wine to run with a fake > partition. > > But there are a few more problems left. > > 1) What's the reason that under KDE 2.0.0 & 2.0.1

i am new to time series,whatever i know up till now,from that i have uploaded time series file & what to build arma model,but for that i want p & q values(orders) tell me how to calculate best p & q values to find best AIC values for model i am doing but giving error >bhavar<-read.table(file.choose()) #taking time series file > decompose(bhavar$V1) Error in

Hi All, I'm trying to build klibc against my own kernel source tree. The build goes fine, the problem is to install it. As usr/klibc/README asks, I've create a symlink called linux pointing to my kernel tree: lrwxrwxrwx 1 root root 25 Jul 2 16:18 linux -> /usr/src/linux-2.6.22-rc6 anderson-herzer:/usr/local/src/klibc-1.5# export LANG=C anderson-herzer:/usr/local/src/klibc-1.5#