similar to: Http_proxy settings with autoproxy.php

Hello, I have written code to plot an xyplot as follows: library(lattice) xyplot(len~ageJan1|as.factor(cohort),groups=sex,as.table=T,strip=strip.c ustom(bg='white',fg='white'),data=dat, xlab="Age (January 1st)",ylab="Length (cm)",main="Linear models for male and female cod, by cohort",type='p',

Hello, I am currently trying to show the abundance of two species of zooplankton within the North Sea as pie chart bubble plots. I followed Werner Wernersen's advice in R help (http://finzi.psych.upenn.edu/R/Rhelp02a/archive/48644.html) and used Paul Murrell's paper "Integrating Grid Graphics Output with Base Graphics Output" (in R News) to try and do this (using the gridBase

I am trying to fit a generalised least squares model using gls in the nlme package. The model seems to fit very well when I plot the fitted values against the original values, and the model parameters have quite narrow confidence intervals (all are significant at p<5%). The problem is that the log likelihood is always given as -Inf. This doesn't seem to make sense because the model

Dear All, This is probably a very basic question but: I have plotted a map of the Barents Sea and surrounding coastline using: map('worldHires',ylim=c(50,85),xlim=c(5,65),fill=T,resolution=0) map.axes() map.scale(x=30,metric=T) Next, I imported a shapefile with depth contours for the sea: contours<-read.shape("D://My Documents/BarentsSea.shp",dbf.data=T) (This is in

Dear R-users, I have imported a shapefile with depth contours for a sea: depths<-read.shape("D://My Documents/BarentsSea.shp",dbf.data=T) (This is in mercator projection) **Is there a way to convert this shapefile into a format that it may be plotted on a contour plot?** I wish to add these contours onto a map (already coded using 'maps' package) to map the sea contours

Hi all, I''m trying to get rails to run under apache and have looked at the various how-to pages, but don''t seem to see an answer to my basic question: Can I do this without using mod-rewrite? Do I have to use .htaccess with various rewrite rules, or can I just do it with a really minimal .htaccess that only says something about the AddHandler for .cgi? -- cheers, Bruce

Dear R-devel, Apologies for sending what is probably a very simple question to R-devel: I am definitely missing something very simple and can't work out what it is. I've been trying to find the problem here for about a month and need some help! I am trying to work out how to run a C program from an R script. Rather than try the C program directly, I'm trying to get a much simpler

Problem: neither fg or bg nor color work properly in dotchart. version: R-1.7.1 for windows code which shows the errors: x <- matrix(rnorm(16),ncol=2,dimnames=list(paste("a",1:8,sep=""),c("before","afte r"))) dotchart(x,fg="blue",bg="lightgrey") dotchart(x,color=c("red","blue")) Dr Ian J Wilson Lecturer in

For the record. -----Original Message----- From: ripley@stats.ox.ac.uk [mailto:ripley@stats.ox.ac.uk] Sent: Tuesday, June 18, 2002 3:21 PM To: Warnes, Gregory R Cc: 'r-help@stat.math.ethz.ch' Subject: RE: [R] Problems with url/download and http_proxy The port is not supposed to be required, so rather than fix the docs can anyone fix the problem? On Tue, 18 Jun 2002, Warnes, Gregory R

Full_Name: Michael Watson Version: 1.7.1 OS: Suse Linux 8.1 Submission from: (NULL) (149.155.96.3) I am using Suse Linux 8.1: IAHC-LINUX03:~ # uname -a Linux IAHC-LINUX03 2.4.20-64GB-SMP #1 SMP Mon Mar 17 17:56:03 UTC 2003 i686 unknown unknown GNU/Linux and R 1.7.1: IAHC-LINUX03:~ # R --version R 1.7.1 (2003-06-16). Copyright (C) 2003 R Development Core Team R is free software and comes with

This does seem to fix my problem: > Sys.getenv("http_proxy") http_proxy "http://gproxy1.pfizer.com/" > url("http://cran.r-project.org/src/contrib/PACKAGES",'r') description "http://cran.r-project.org/src/contrib/PACKAGES" class

Hi, I''m attempting to use Puppet with Vagrant to setup some boxes. My desktop is sitting behind a corporate HTTP proxy. This is my current (rather Spartan) manifests file: package { "python-pip": > ensure => "installed" > } > package { "build-essential": > ensure => "installed" > } When I do this, Vagrant appears to

I would like to use the getBioC.R script from http://www.bioconductor.org/getBioC.R to install the biobase packages. Unfortunately, url() and download.file() die when trying to talk to my proxy: > getBioC("exprs") connect: Cannot assign requested address unable to connect to 'gproxy1.pfizer.com'. connect: Cannot assign requested address unable to connect to

I would like to use the getBioC.R script from http://www.bioconductor.org/getBioC.R to install the biobase packages. Unfortunately, url() and download.file() die when trying to talk to my proxy: > getBioC("exprs") connect: Cannot assign requested address unable to connect to 'gproxy1.pfizer.com'. connect: Cannot assign requested address unable to connect to

I am trying to use the value of an ID variable in an if statement and not getting the results I expected. # ID values for two school districts > with(rf, tapply(DistrictID, DistrictName, min) ) Aberdeen School Dist. # 58 Buhl Joint School District 59340 53409 This creates DNAME as I expected ...

Gang, For months now, we're all seeing repeated bruteforce attempts on SSH. I've configured my pf install to ratelimit TCP connections to port 22 and to automatically add IP-addresses that connect too fast to a table that's filtered: table <lamers> { } block quick from <lamers> to any pass in quick on $ext_if inet proto tcp from any to ($ext_if) port 22 modulate

A virus has been detected in a message addressed to helpdesk.aberdeen at cnrinternational.com from r-help at lists.r-project.org. The subject of the message is Re: Here. The virus could not be cleaned and the message is held in Dirty Messages Message from: r-help at lists.r-project.org. Message subject: Re: Here Sent to: helpdesk.aberdeen at cnrinternational.com Dated: Sun, 14 Nov 2004

Dear R users, I am new to R and wanted to apply competing risk methods in my research work. I used the R code given by Zhang et al in his paper 'Nomogram for survival analysis in the presence of competing risks published in Ann Trans Med 2017:5(20):403. I am struggling with getting calibration curve thro' internal validation. I am happy to receive suggestion in the coding as well

Sparc Solaris 8 SunStudio 11 compilers R-2.3.1 spatstat 1.10-1 R-2.3.1 and spatstat were installed using SunStudio11 compilers on a Sparc Solaris 8 machine. No errors were reported in the compilations, however, when I try to load spatstat I get an error: > library(spatstat) Loading required package: mgcv This is mgcv 1.3-20 Error in dyn.load(x, as.logical(local), as.logical(now)) :

Representative small sample of data: algorithmID <- factor(c(rep('alg1',4),rep('alg2',4),rep('alg3',4))) threshold <- factor(rep(c(.45,.50,.55,.60),times=3)) score <- c(30,32,31,30,10,12,13,14,22,21,20,24) d <- data.frame(algorithmID,threshold,score) AlgorithmID is the name of each algorithm; threshold is the value of a parameter used by the algorithm that