similar to: Questions on RWeka classifiers

Hi, I am using some classifiers in RWeka packages and met a couple problems. (1) J48 implements C45 classifier, the C45 should be able to handle missing values in both training set and test set. But I found the J48 classifier can not be evaluated on test set with missing values--it just ignore them. (2) The ensemble classifiers in RWeka such as bagging and boosting: there is a

Hi everyone, I have trouble to use RWeka, I tried: (w=weather dataset, all preditors are nominal) > m<-J48(play~., data=w) > e<-evaluate_Weka_classifier(m,cost = matrix(c(0,2,1,0), + ncol = 2),numFolds = 10, complexity = TRUE,seed = 123, + class = TRUE) it gives me exactly what I want, but when I tried the same classifier on the other published data: (iris dataset has all numeric

Hello, I have some trouble in achieving the desired parametrisation for the weka classifier functions, using the package RWeka. The problem is, that the functions result=classifier(formula, data, subset, na.action, control = Weka_control(mycontrol)) do not seem to be manipulated by the mycontrol- arguments Perhaps this should be resepected via the handlers- argument , but the

Dear all, I am trying to construct a wrapper that uses random forest to evaluate the subsets using RWeka and when I do: nombi <- make_Weka_filter("weka/attributeSelection/WrapperSubsetEval") datbin<- nombi(gene ~., data=X1X2X3X4W, control =Weka_control( B = list("weka.classifiers.trees.RandomForest"))) I also have tried with an other induction algorithm:

Hi, First of all, I'm a complete rookie to R (~2 weeks). But anyway, I'm trying to use the RWeka interface for C4.5 (J48) classification. As a proof of concept I'm using the Iris data set to create a training set of 30 instances (10 per species) and use the remaining 120 instances as my test set. This is what I do: trainingIndices <- rep(1:10, 3) + rep(0:2, each=10) * 50

Le jeudi 09 f?vrier 2012 ? 15:31 +0200, Kari Ruohonen a ?crit : > Hi, > I am trying to replicate a training of AttributeSelectedClassifier with > CFsSubsetEval, BestFirst and NaiveBayes that I have initially done with > Weka. Now, I am trying to use RWeka in R. > > I have a problem of passing arguments to the CfsSubsetEval, BestFirst > and NaiveBayes. I have first created an

Hello everybody I'm having some difficulties to design the decision tree algorithm J48. I am using the following code and when I run it gives me the following message plot(m1) Error in plot.Weka_tree(m1) : Plotting of trees with multi-way splits is currently not implemented. #The code library(RWeka) library(randomForest) library(party) if(require(mlbench, quietly = TRUE) &&

Hi all, Although I sent the mail to Piotr, the author of FSelector, it should be better to ask here to let others know. Yanwei Begin forwarded message: From: Yanwei Song <yanwei.song@gmail.com> Date: September 7, 2011 4:41:58 PM EDT To: p.romanski@stud.elka.pw.edu.pl Subject: FSelector and RWeka problem Dear Piotr, Thanks for developing the FSelector package for us. I'm a new

Hi, I want to save a RWeka model into a file, in order to retrive it latter with a load function. See this example: library(RWeka) NB <- make_Weka_classifier("weka/classifiers/bayes/NaiveBayes") model<-NB(formula,data=data,...) # does not run but you get the idea save(model,file="model.dat") # simple save R command # ... load("model.dat") # load the model

Hi, I'm trying to use RWeka and followed the following example from the RWeka manual. ============ ## Use some example data. w <- read.arff(system.file("arff","weather.nominal.arff", package = "RWeka")) ## Identify a decision tree. m <- J48(play~., data = w) m ## Use 10 fold cross-validation. e <- evaluate_Weka_classifier(m, cost = matrix(c(0,2,1,0),

Hello, I have a question concerning decision trees coming from RWeka : library(RWeka) m =J48(Species~.,data=iris) How could such a decision tree be transferred into a matrix, pretty much in the same fashion, as it is done by getTree() in library(ofw) library(ofw) data(srbct) attach(srbct) ##ofwCART learn.cart.keep <- ofw(srbct,

Dear All,I encountered a problem when I use RWeka for prediction. Specifically, I use the following: res=J48(X1~.,data=mydata); predict(res), #it worked fine but when I tried to use a different data set, i.e. predict(res,newdata=mynewdata); all the predictions I get is 0, which apparently is problematic. What is weird is, if I use the old data, but use the newdata option, i.e.

Hi everyone, I have a test set with more than 1000 cases, when I use evaluate_Weka_classifier(RWeka)to evaluate my classifier on this test set, the output shows me the result of only 83 cases. I do have missing values in predictors, so I tried na.acton=na.pass, but it dosen't help. Now I confused, why RWeka ignore so many cases in my test set? Is there any setting I didn't notice in

I am using machine learning for one researching. I am using some classifiers with 5-fold CV . I would like to know how it is possible to extract the accuracy, for example, for KNN,neural networks and J48, for each one of 5-fold because when I apply CV to my classifier, I obtain the "mean accuracy" of 5-fold but each accuracy/error of each fold is not returned. Any help is welcome and

Hi I'm trying to use RWeka to use a NaiveBayes Classifier(the Weka version). However it crashes whenever there is a NA in the class Gender Here is the.code I have with d2 as the data frame. The first call to NB doesn't make R crash but the second call does. NB <- make_Weka_classifier("weka/classifiers/bayes/NaiveBayesSimple") d2[,64]<-d2$Gender=="M"

Hi, Everyone, I just installed R-2.7.2 on my computer and then installed package RWeka, version 0.3-13. I noticed that when using command "evaluate_Weka_Classifier", with parameter "newdata=", it still evaluated on training data. Does anyone else noticed this? My older version of R-2.6.1 with RWeka 0.3-9 worked fine on the same computer. Bin

Hello, I have two questions concerning the RWeka package: 1.) First question: How can one perform a cross validation, -say 10fold- for a given data set and given model ? 2.) Second question What is the correct syntax for the parametrization of e.g. Kernel classifiers interface m1 <- SMO(Species ~ ., data = iris, control =

Running Weka's command line with calls to system(), like this > system("java weka.classifiers.bayes.NaiveBayes -K -t HWlrTrain.arff -o") === Confusion Matrix === a b <-- classified as 3518 597 | a = NoSpray 644 926 | b = Spray === Stratified cross-validation === === Confusion Matrix === a b <-- classified as 3512 603 | a = NoSpray

Hi everyone, I am new to field of data mining as well as particularly using R respectively RWeka for writing my master thesis. I intend to create some specific J48 classification trees with the RWeka_classifiers_tree function. When I run the source code it says ?cannot handle numeric class?. I therefore checked the arff-file and indeed there it says that the class variable is numeric although it

Dear Forum, I have installed and used various Weka functions in R - both already available interfaces or created ones via make_Weka_classifier - without any trouble. However, the RBFNetwork (RBF Neural Network) function is one that I have not been able to call. I tried creating the R interface using RBF<- make_Weka_classifier("weka/classifiers/functions/RBFNetwork"), and the