similar to: R2winBUGS & WinBUGS gui

Hello ALL! I am running Linux, Fedora 15 64-bits, and R on it. I need to use WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project, to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode), not on CRAN. Author(s) states that it is equivalent for R2WinBUGS. I tried briefly, and realized few minor

Hi all, I did some analysis using package R2WinBUGS to call WinBUGS. I set the iterations to 50000 (fairly a large number, I think), but after the program was done, the effective posterior samples contained only 7 draws. I don't know why. By the way, I checked posterior sample size by using bugsobj$n.sims. And, for my previous practice with WinBUGS/R2WinBUGS, no such strange thing happend.

Hi all, I've managed to get JAGS working on my Ubuntu Hardy Linux with a 32-bit computer and AMD processors using R 2.8.1. JAGS is great. I've read that JAGS is the fastest, but that hasn't been my experience. At any rate, I have more experience with WinBUGS under Windows and would like a version of that working as well. It seems like I've read a lot on the subject and tried a

Hi, I'm running wine-1.0.1, OpenBUGS 3.0.3, R 2.9.0, and R2WinBUGS on a Redhat Enterprise Linux machine. Following various peoples' suggestions... This works perfectly (yay!): wine Z:/opt/OpenBUGS/winbugs.exe Within R, however, I get this: (setup the example from ?bugs, then....) R> schools.sim <- bugs(data, inits, parameters, model.file, n.chains=3,

This weekend I noticed that my R2WinBUGS connection was no longer working on my Windows computer at work AND my Ubuntu linux computer at home. As soon as WinBUGS opens, the message reads Index Out Of Range. I have un-installed and re-installed R on both computers and the problem remains the same. At first I thought it was the new version of R, but I was able to overcome the problem (on Windows

Greetings: I'm going to encourage some students to try Bayesian ideas for hierarchical models. I want to run the WinBUGS and R examples in Tony Lancaster's An Introduction to Modern Bayesian Econometrics. That features MS Windows and "bugs" from R2WinBUGS. Today, I want to ask how people are doing this in Linux? I have found a plethora of possibilities, some of which are not

Hi All, I am trying to figure out how to use R-Coda with the output from OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS' "bugs" and have used "read.bugs" to build the coda object. I can successfully switch to OpenBugs and run the same model and get the basic summary

Hi, I have a strange behaviour of openBUGS and WinBUGS when I start them from R. Version: R: 2.10.1 openBUGS: 3.07 WinBUGS: 1.43 R2WinBUGS: 2.1-16 BRugs: 0.5-3 I have a model and data without initial start values. If I use the stand alone versions of openBUGS and WinBUGS I don't have any problems and I get what I want. If I use function bugs() from R2WinBUGS- resp. BRugs-Library then

I'm back! I've just learned that, on a fully updated Fedora Core Linux5 sytem, the working solution to access Winbugs under wine via the R package "rbugs" no longer works. Here was my last post on this topic (with the formerly working solution) from January. http://finzi.psych.upenn.edu/R/Rhelp02a/archive/68497.html Currently, what happens is that WinBUGS starts up, but just

After running a model for a while and seeing that it did not converge yet, how can I continue to run, ie not starting anew, the model? I know if I manually/interactively use winbugs, this is possible anytime, but how can I do this in r2winbugs, so that my existing sim$sims.array and other stuff in the object that bugs() returns gets extended? Thanks Toby

Dear all, I tried to run WinBUGS model in R by using package R2WinBUGS, but I failed because of the massage : cannot calculate DIC for model in log file of WinBUGS14. In fact, the model works in WinBUGS and I can get summaries of the model, such as density, stats..., except DIC , because DIC may not be appropriate in this kind of model due to some reasons(according to the manual of WinBUGS14),

I'm trying to understand how a latent state matrix is updated by the MCMC iterations in a WinBUGS model, using the package R2WinBUGS and an example from Kery and Schaub's (2012) book, "Bayesian Population Analysis Using WinBUGS". The example I'm using is 7.3.1. from a chapter on the Cormack-Jolly-Seber model. Some excerpted code is included at the end of this message;

When I use the 'bugs' function from R, WinBUGS runs correctly, but R freezes. The only way to use R after this is to stop calculations (without my file that documents the calculation). However, I want to save the output in R so I can use it in further models. Does anyone know how to fix this problem? -- View this message in context:

Dear All: Do you have any experience on calling winbugs in R enviorment? I uploaded R2winbgus, pktools, BRugs, ect. in order to call winbugs. In the end, I try to use bugs(). The error message still displays that bugs() can not find. Do you have any similar issue? If so, could you give your advice? Many Thanks! Xin [[alternative HTML version deleted]]

Apologies if this isn't acceptable for the general help list. I'm running OpenBUGS model via the R2WinBUGS package interface, under Windows. Is it possible to terminate running models, short of using the Windows Task Manager to forcibly exit the program? Regards, Richie. Mathematical Sciences Unit HSL ------------------------------------------------------------------------

Frank (or anyone else), can you offer any comments comparing runjags, R2jags, rjags ? I couldn't find any vignettes, nothing except a brief mention on Task Views. Kevin On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well.

Hello, I recently changed from Win XP to Mac OS X (10.5.1). Is there a way to run Bugs (in any version) in R (R version 2.6.0 (2007-10-03)) on this platform? Fredrik

Hi there - I have a question for any of you who use R2WinBUGS to call WinBUGS using the useWINE option in that package. I have Codeweaver's Crossover emulator installed on my Intel Mac with WinBUGS working fine if I start it from Crossover. But there is supposed to be a way to start it directly from a command line, which I could pass to the R2WinBUGS using the bugs(...,

Greetings - I run a multi-pro server box (GNU/Linux), on which I've installed winBUGS under wine. Works fine, and plays nice with r2WinBUGS, provided everything is done through a graphical front-end (either by working from console, or using a virtual desktop via VNC or equivalent). However, I'm wondering if there is a way to use R2winBUGS and winBUGS such that winBUGS does not spawn

Hello! I am working on a package where Enhances field seems to be a plausible option. When I add package, say coda, to this field, I get the following warning with recent R-devel: ---- * checking for working latex ... OK * using log directory '/home/ggorjan/programs/R/devel/test.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-06 r40129) * checking for file