similar to: R 2.6 and library(survival)

I want to use the aggregate function to summarize data by a factor (my field plots), but I want the summary to be the majority level of another factor. For example, given the dataframe: Plot1 big Plot1 big Plot1 small Plot2 big Plot2 small Plot2 small Plot3 small Plot3 small Plot3 small My desired result would be: Plot1 big Plot2 small Plot3 small I

Hi, this is not a new doubt, but is a doubt that I cant find a good response. Look this output: > m.lme <- lme(Yvar~Xvar,random=~1|Plot1/Plot2/Plot3) > anova(m.lme) numDF denDF F-value p-value (Intercept) 1 860 210.2457 <.0001 Xvar 1 2 1.2352 0.3821 > summary(m.lme) Linear mixed-effects model fit by REML Data: NULL AIC BIC

Hi, a colleague of mine encountered some unexpected behavior regarding the postscript output from R. It's difficult for me to tell whether or not this is an R problem or a ghostview/gv/interpreter problem. Just to note, I think it's exactly the same situation reported here: http://finzi.psych.upenn.edu/R/Rhelp02/archive/25436.html The following code produces a working plot (no

Hello. Does anyone know of an existing function that takes a list in the form of: Plot1 Species1 Abundance1 Plot1 Species2 Abundance2 Plot2 Species1 Abundance1 Plot2 Species3 Abundance3 . . . PlotN SpeciesN AbundanceN and translates into a matrix in the form of Species1 Species2.... SpeciesN Plot1 Abundance1 Abundance2... AbundanceN Plot2 Abundance1

Hi, I just try to draw multiple plots in one page using R, I used par command. For example I have 7 plots, but instead of arranging them in the default way plot1 plot2 plot3 plot4 plot5 plot6 plot7 I want them in this order plot1 plot2 plot3 plot4 plot5 plot6 plot7 Could somebody tell me how to do this, please? Thanks so many. Suyan

Hi everyone! This must be a common question but I have not found an answer to it in the archives yet. I am producing four plots with par(mfrow=c(2,2)). The x-axis is the same for all of them but the y-axis is different. What I would like to do is to have a different range of the y-axis and different intervals between tick marks. BUT I would like to have the same number of tick marks and I would

Dear all, I wish to generate a lattice boxplot which skips an empty cell in a design. I have trawled r-help, scruitinized xyplot(lattice) help page, and merrily reproduced examples of using skip from a couple of previous r-help queries and the example given in Pinheiro & Bates. But I must be missing something... Here's an example (running R 1.9.1 on Win2k): # generate some data df1

I have two dataframes (df) that share a column header ("plot.id"). In the 1st df, "plot.id" records are repeated a variable number of times based on the number of trees monitored within each plot. The 2nd df only has a single record for each "plot.id", and contains a variable named "load" that is collected at the plot-level and is only listed once per plot

I am doing calculations in a loop and then plotting the results by adding a point to each of 2 charts at the end of the loop. Its very informative as you can see the progression through time. My problem is, if I have 2 plots, I don't know how to get the focus back to the first plot. layout(matrix(c(1,2))) plot(iris[,1],col="red",) #plot1 plot(iris[,3],col="blue") #plot2

Dear All (probably Hadley), I am now trying to customise some plots using a bar geom. I do not want to use the default binning statistic, but rather calculate the bar heigths separately. I do manage this, but for comparison purposes I would like to have a set of plots all with the same y-axis height. But I do not seem to find out how to fix the scale of the y-axis in this case. Any tips?

Dear List, I'm stuck on what seems like a simple indexing problem, I'd be very grateful to anyone willing to help me out. I queried a dataframe which returns a character vector called "plot". I have another dataframe from which I want to subset or select only those rows that match "plot". I've tried subset, and also the "which" command. plot

This may be asking too much, but I'm wondering if anyone has a solution (even a hack) for creating multiple (overlay) plots in an Sweave file and post-processing the overlays in beamer appropriately. For example, suppose I have a series of figure blocks in my .Rnw file: <<plot1,fig=TRUE>>= [stuff] @ <<plot2,fig=TRUE>>= [stuff] @ <<plot3,fig=TRUE>>=

Hi R people! I am looking for some suggestions writing an if-else function. The idea is to characterize different plots containing counts of variables (here parasites). If a plot has a count equal or higher than 4 for any parasite the function should return a 1 else a 0. Later I can loop the function over all plots. Here I have a little subset of my data: VariablePAR Plot1

Hi R user,I am struggling to figure out on how I can calculate the average from the two tables in R. Any one can help me? really your help would be grateful- I am spending so much time to figure it out. It should not be so hard, I think. I have very big data but I have created a hypothetical data for simplification. for example I have : table 1 table 1: species occurance data

Hi, par(mfrow = c(2,2)) will create a 2x2 window that I can use to plot 4 diferent figures in: [plot1 plot2] [plot3 plot4] But how can do 3 so that the bottom spans the width of the upper two: [plot1 plot1] [p l o t 3] Is this possible in R? -- View this message in context: http://r.789695.n4.nabble.com/multiple-plots-in-single-frame-2-upper-1-lower-tp3679574p3679574.html Sent from the R

I am trying to use the Lattice package to produce the same result as I can with the base graphics. With base graphics I can type: x <- 1:100 y <- x+rnorm(length(x)) g <- lm( y ~ x ) model.y <- g$coef[1]+g$coef[2]*x plot(x,y) # a plot of the data lines( x, model.y ) # a plot of the model, superimposed on the first plot With Lattice graphics I've got this far:

Folks, Please help with a graphics problem, I am running R2.4.0 on Windows XP. In much earlier version of R (1.3? about December 2001) I could par(mfrow=c(1,1)) plot(1,1,xlab="X",ylab="Y") plot1<-recordPlot() plot(2,2,xlab="X2",ylab="Y2") plot2<-recordPlot() par(mfrow=c(2,1)) plot1 plot2 and produce the same effect as the following

Hi. My data contains information for 10 hospitals for 12 different measures. Let's call it x1-x12. I need to create a boxplot for each one of this measures and put them into one page. Each plot also needs to be independent, i.e. cannot use the group feature because of different scales for each measure. I was successful using the following code: x1 <- c(1.317604376, 0.978038233,

Hi: I think I found an error in plot.lm with the option which=5, of course I can be wrong , as usually happen, but I had work on it for a while and show it to some other people that work with R, and so far I don't see what I can be interpreting wrong. I also worked over the plot.lm's code and change some lines to get what I call "the right plot", if any body is

Hi, I have created a barplot using the following code. a<-c(11,23,15,34,42,31) m<-matrix(a,nrow=2) m[2,]<-(-1)*m[2,] par(mar=c(4,4,4,0)) barplot(m[2,],horiz=T) par(mar=c(4,0,4,2)) barplot(m[1,],horiz=T,col="black") and the plot obtained is shown in "plot1.tiff". I was not willing to see the gap (vertical space) between two graphs. How can I achieve it? Further