Displaying 20 results from an estimated 20000 matches similar to: "bootstrap"
2010 Dec 19
2
R.matlab memory use
Hi,
I am trying to load into R a MATLAB format file (actually, as saved by
octave). The file is about 300kB but R complains with a memory
allocation error:
> library(Rcompression)
> library(R.matlab)
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.2.0 (2010-03-13) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.7.2 (2010-04-13) successfully
2012 Nov 29
5
bootstrapped cox regression (rms package)
Hi,
I am trying to convert a colleague from using SPSS to R, but am having
trouble generating a result that is similar enough to a bootstrapped cox
regression analysis that was run in SPSS. I tried unsuccessfully with
bootcens, but have had some success with the bootcov function in the rms
package, which at least generates confidence intervals similar to what is
observed in SPSS. However, the
2012 Apr 02
1
Bootstrapped Tobit regression - get standard error 0...
I am trying to work out a bootstrapped Tobit regression model. I get the
coefficients all right, but they all have standard error zero. And I am
unable to figure out why. I know the coefficients are correct because that's
what I get when do a Tobit (without bootstrapping). Here's my code:
# Bootstrap 95% CI for Tobit regression coefficients?
library(boot)
library(AER) # for the Affairs
2005 Jan 29
1
Bootstrapped eigenvector
Hello alls,
I found in the literature a technique that has been evaluated as one of the
more robust to assess statistically the significance of the loadings in a
PCA: bootstrapping the eigenvector (Jackson, Ecology 1993, 74: 2204-2214;
Peres-Neto and al. 2003. Ecology 84:2347-2363). However, I'm not able to
transform by myself the following steps into a R program, yet?
Can someone could help
2007 Jan 06
2
Bootstrapping Confidence Intervals for Medians
I apologize for this post. I am new to R (two days) and I have tried and tried
to calculated confidence intervals for medians. Can someone help me?
Here is my data:
institution1
0.21
0.16
0.32
0.69
1.15
0.9
0.87
0.87
0.73
The first four observations compose group 1 and observations 5 through 9 compose
group 2. I would like to create a bootstrapped 90% confidence interval on the
difference of
2007 Oct 16
2
Bootstrapping Contrasts for Repeated Measures ANOVA
I have executed a Repeated Measures ANOVA with one DV (latency) and
one within subject factor (acoustic condtion: 3 levels) by
bootstrapping my sampling distribution of F from the empirical sample
distribution. I chose to resample because the sample distribution
deviates from normality a lot.
The overall F is significant and now I wish to decompose this with
contrasts to ask if latencies to
2006 Jul 11
2
non positive-definite G matrix in mixed models: bootstrap?
Dear list,
In a mixed model I selected I find a non positive definite random effects
variance-covariance matrix G, where some parameters are estimated close to
zero, and related confidence intervals are incredibly large.
Since simplification of the random portion is not an option, for both
interest in the parameters and significant increase in the model fit, I
would like to collect
2005 Jun 01
1
Bootstrap direction
Hi all,
I am trying to bootstrap a small data set into 1000 "pseudodatasets" and
then run an ANOVA on each one. Can anyone provide guidance on how I could
do this?
Thank you.
-Dan Janes
************************************************
Dan Janes, Ph.D.
Harvard University/OEB
26 Oxford St.
Cambridge, MA 02138
Office: 617-496-2375
Fax: 617-495-5667
Email: djanes at oeb.harvard.edu
2007 May 18
1
Bootstrapped standard errors
Dear Friends,
I'm trying to learn to how to get Bootstrapped standard errors for estimated coefficients from a regression.
For instance suppose I have the following model
logitmodel <- glm (y~X1+X2+X3, family=binomial(link="logit"))
beta <- logitmodel$coef
can somebody please guide me on how to use the package boot to obtain bootstrapped SE's for the associated betas.
2013 Mar 12
1
Bootstrap BCa confidence limits with your own resamples
I like to bootstrap regression models, saving the entire set of bootstrapped
regression coefficients for later use so that I can get confidence limits
for a whole set of contrasts derived from the coefficients. I'm finding
that ordinary bootstrap percentile confidence limits can provide poor
coverage for odds ratios for binary logistic models with small N. So I'm
exploring BCa confidence
2007 Nov 20
1
Problem with code for bootstrapping chi square test with count data
Hi,
I'd like some advice on bootstrapping in R.
I have a species x with 20 individuals and a factor containing 0 and 1's
(in this case 5 zeros and 15 ones). I want to compare the frequency of
the occurrence of 1 with a probability value. This code seems to work to
do this in R.
attach(test)
p <- c(0.5272, (1-0.5272))
sp1_1 <- length(subset(x, x==1))
sp1_0 <- length(subset(x,
2011 May 05
1
memory and bootstrapping
hello,
the following questions will without doubt reveal some fundamental
ignorance, but hopefully you can still help me out.
I'd like to bootstrap a coefficient gained on the basis of the
coefficients in a logistic regression model (the mean differences in
the predicted probabilities between two groups, where each predict()
operation uses as the newdata-argument a dataframe of equal size as
2007 May 27
1
Parametric bootstrapped Kolmogorov-Smirnov GoF: what's wrong
Dear R-users,
I want to perform a One-Sample parametric bootstrapped Kolmogorov-Smirnov
GoF test (note package "Matching" provides "ks.boot" which is a 2-sample
non-parametric bootstrapped K-S version).
So I wrote this code:
---[R Code] ---
ks.test.bootnp <- function( x, dist, ..., alternative=c("two.sided", "less",
"greater"), B = 1000 )
{
2008 Jul 21
5
Coefficients of Logistic Regression from bootstrap - how to get them?
Hello all,
I am trying to optimize my logistic regression model by using bootstrap.
I was previously using SAS for this kind of tasks, but I am now
switching to R.
My data frame consists of 5 columns and has 109 rows. Each row is a
single record composed of the following values: Subject_name, numeric1,
numeric2, numeric3 and outcome (yes or no). All three numerics are used
to predict
2003 Apr 29
2
Cluster analysis and bootstraps
Hi R helpers,
I was wondering if anybody knows if is possible to generate bootstrap
values for a cluster analysis in R. What I am trying to do is obtain
some confidence on the clusters formed by resampling the data set. A
similar type of analysis is used in molecular taxonomy and the
confidence values of each cluster are placed in the nodes of the
dendogram. Any ideas on how to do this
2005 Nov 19
2
[LLVMdev] LLVM + GCC Integration Proposal
On Fri, 18 Nov 2005, Jeff Cohen wrote:
> If copyright is assigned to the FSF, would they change the license to GPL?
We would work something out. That is a huge 'if'.
> Also, would they be allergic to the VC++ suppport that currently exists?
> After all, if they're not careful, going down this route may result in a gcc
> that can be bootstrapped with VC++ :)
I
2009 Jan 19
3
bootstrapped eigenvector method following prcomp
G'Day R users!
Following an ordination using prcomp, I'd like to test which variables
singnificantly contribute to a principal component. There is a method
suggested by Peres-Neto and al. 2003. Ecology 84:2347-2363 called
"bootstrapped eigenvector". It was asked for that in this forum in
January 2005 by J?r?me Lema?tre:
"1) Resample 1000 times with replacement entire
2011 Mar 01
2
bootstrap resampling question
Hello there,
I have a problem concerning bootstrapping in R - especially focusing on the resampling part of it. I try to sum it up in a simplified way so that I would not confuse anybody.
I have a small database consisting of 20 observations (basically numbers from 1 to 20, I mean: 1, 2, 3, 4, 5, ... 18, 19, 20).
I would like to resample this database many times for the bootstrap process with
2006 Apr 20
1
Bootstrap error message: Error in statistic(data, origina l, ...) : unused argument(s) ( ...) [Broadcast]
I quoted the relevant part of the documentation for you. Have you actually
try to read what it says?
Sure, you don't get any error, but have you checked whether any
bootstrapping was actually done? Most of those functions are generics, thus
having the "..." argument that can take anything. Doesn't mean they will be
used. See if the following helps:
> x <- 1:10
>
2012 Feb 21
2
bootstrap in time dependent Cox model
Dear R-list,
I am wondering how to perform a bootstrap in R for the weighted time
dependent Cox model? (Andersen?Gill format, with multiple observations
from each patients) to obtain the bootstrap standard error of the
treatment effect.
Below is an example dataset. Would 'censboot' be appropriate to use in
this context? Any suggestions/references/direction to R-package will
be highly