similar to: simple averaging question?

I am struggling to get GAM model predictions from the top models calculated using model.avg in the package "MuMIn". My model looks something like the following: gamp <- gam(log10(y)~s(x1,bs="tp",k=3)+s(x2,bs="tp",k=3)+ s(x3,bs="tp",k=3)+s(x4,bs="tp",k=3)+s(x5,bs="tp",k=3)+ s(x6,bs="tp",k=3)+x7,data=dat,

Dear All, I'm using AIC-weighted model averaging to calculate model averaged parameter estimates and partial r-squares of each variable in a 10-variable linear regression. I've been using the MuMIn package to calculate parameter estimates, but am struggling with partial r-squares. There doesn't seem to be any function in the MuMIn package dealing with partial r-square

Dear all, does anyone have r code to perform model-averaging of regression parameters by Akaike weights, and/or to do all-possible-subsets lm modelling that reports parameter estimates, AICc and number of parameters for each model? I have been looking for these in the archive but found none. (I am aware that many of you would warn me against these methods advocated by Burnham and Anderson

Hi, What's the best way to average dates? I though mean.POISXct would work fine but... > a [1] "2007-04-02 19:22:00 WEST" > b [1] "2007-03-17 16:23:00 WET" > class(a) [1] "POSIXt" "POSIXct" > class(b) [1] "POSIXt" "POSIXct" > mean(a,b) [1] "2007-04-02 19:22:00 WEST" > mean(b,a) [1] "2007-03-17

Dear R-users, I've spent most of the day reading R documentation at length but couldn't find something perhaps obvious. I have a dataset made of 3 morphometric variables for a series of watershed [log(slope); log(drainage_area); distance_to_outlet] My aim is to predict the value of log(slope) for pairs of [drainage_area; distance_to_outlet] (sounds like a plain linear model fitting,

I have a dataframe with names in the first column and wait times between decisions in the second column. Since individuals make multiple decisions, I want the average for each individual. For example, the data might look like this name wtime jo 1 jo 2 jo 1 jo 3 tim 3 tim 2 tim 2 ro 1 ro 2 etc. I'm hoping there is something like mean(dataname$wtime[name]) which will just

HI, List I want to know weather any body has used BMA Package for model averaging for prediction of future values.....What are the paprmeters we have to suplly to the model. Any script for the same. thanks in advance ANIL KUMAR( METEOROLOGIST) LRF SECTION NATIONAL CLIMATE CENTER ADGM(RESEARCH) INDIA METEOROLOGICAL DEPARTMENT SHIVIJI NAGAR PUNE-411005 INDIA MOBILE +919422023277

Hello, is it possible in R to calculate a Weighted averaging partial least squares regression? I'm not firm in statistics and didn't found anything about weighted averaging in combination with PLS in the help archives. Or is it possible to develop a workaround with the pls-package? thanks for help in advance Andreas Plank -- _____________________________________________ Dipl. Biol.

Dear R-helpers, I have a list containing 5000 elements, each element is a dataframe containing one ID column (identical over the 5000 dataframes) and 9 numeric variables, e.g. ID VAR1 VAR2 VAR3 ... VAR9 I would like to create a new dataframe containing the ID column and the mean values of the 9 numeric variables. So, the structure of this new dataframe would be identical to the structure of the

Dear R-philes, I am having some trouble averaging across multiple runs of a classifier in an ROC Curve. I am using the ROCR package and the plot() method. First, I initialize a list with two elements where each element is a list of predictions and labels: vowel.ROC <- list(predictions=list(), labels=list()) For every run of the classifier, I append the scores and labels to their

I have the following data: http://i.imagehost.org/0650/Untitled2.jpg How would i average, say the 5th and the 8th entries? Thanks in advance -- View this message in context: http://n4.nabble.com/Simple-averaging-question-tp1009086p1009086.html Sent from the R help mailing list archive at Nabble.com.

Dear all, 1) I have a very large matrix of  str(keep)  num [1:153899, 1:3415] -98.6 -95.8 -96.4 -95.8 -98 ... that  I would like to reduce its size to something like str(keep)  num [1:1000, 1:3415] -98.6 -95.8 -96.4 -95.8 -98 ...  or anything similar in size as this is a matrix that needs plotting (so is ok if it is 1000 row, 995, or 1123) I think what I need here is a way of selecting

Dear R-help and ROCR developers (Tobias Sing and Oliver Sander) - I think my first question is generic and could apply to many methods, which is why I'm directing this initially to R-help as well as Tobias and Oliver. Question 1. The plot function in ROCR will average your cross validation data if asked. I'd like to use that averaged data to find a "best" cutoff but I

Hi Folks, Ran into something I'd really like to do in R simply/elegantly, but my R - coding skills seem surpassed. This is the thing. Imagine the following data: labs<-c("abcdef","abcgg","tgthefdk","tgtijuel","tgtnjmoi","gbnt","dlift") dat<-c(0.5,0.25,1,2,16,0.250,4) dframe<-data.frame(labs,dat) I would like to

Dear All, I have matrix (50000 X 60) of subjects and their responses to a set of questions. All responses are classified into categories (500). I would like to average all subject's responses for each category. I wrote a code using a for loop but is not working. Could please tell me what's wrong with the code? I guess, there is a elegant R way of doing the same thing. Thanks in advance.

Dear all, I have a large dataset which I hope to reduce in size, to make it more useable. I hope to do this by taking an average of each 60 x 60 blockof values and forming a new data frame out of the averaged values. How would I go about taking averages of 60 x 60 'blocks' in R, and cycling through the whole dataset, recording each calculated value in a new table/data frame? Many thanks

Hi there, This seems like it should be simple. I have a data frame of climate data sampled every 10 min. I want to average the entire data frame into 30 min values (i.e., one value for each half hour). Functions like running.mean give me a moving average but I want to reduce the size of the entire frame.. Any ideas how? Cheers! Example of my data timestamp Voltage LwTempDownelling

Dear all, I have a dataframe with 132 columns and 100 rows. Every 2nd column is a repeat measurement so that the columns could be titled, a a b b c c d d etc. I would like to average the repeats such that I am left with a data frame of 66 columns (of means) and 100 rows. I have been trying to use rowMeans but have not been able to average the pairs of columns, only the whole dataframe. Any

I?ve used logistic regression to create models to assess the effect of 3 variables on the presence or absence of a species, including the interaction terms between variables and model averaging using MuMI: model.avg The top models (delta<4) include several models with interaction terms and some models without; model weights are quite low for all models (<0.25). My problem is that the models

I use Windows, R version 2.4.1. I have a dataset in which columns 1-3 are replicates, 4-6, are replicates, etc. I need to calculate an average for every set of replicates (columns 1-3, 4-6, 7-9, etc.) AND each set of replicates should be averaged every 14 rows (for more detail, to measure fruit color using a spectrometer, I recorded three readings per fruit -replicates- that I need to average to