similar to: Error message from nlmer

Hello - I am having trouble extracting data from NetCDF data files using RNetCDF. The data files each have 3 dimensions (longitude, latitude, and a date) and 3 variables (latitude, longitude, and a climate variable). Here is some of the output from print.nc for clarity: ----- dimensions: month = UNLIMITED ; // (1368 currently) lat = 3105 ; lon = 7025 ; variables: float

I am trying to run the following code in R on a Linux cluster. I would like to use the full processing power (specifying cores/nodes/memory). The code essentially runs predictions based on a GAM regression and saves the results as a CSV file for multiple sets of data (here I only show two). Is it possible to run this code using HPC packages such as Rmpi/snow/doParallel? Thank you!

Hello, I'm trying to adjust a non linear model in which the biological response variable (ratio of germinated fungus spores) is dependent on 2 covariates (temperature and time). The response to temperature is modeled by a kind of beta function with 2 parameters (optimal and maximum temperatures) and the time function is a 2-parameter Weibull. Adjustments with nls or gnls work, but I need to

I have a set of time-series climate data with missing entries. I need to add rows for these missing entries to this data set. The only way I know to do this is unsing a foreloop, but this won't work on a list. I've tried to convert the list to a data frame, but that won't happen, either. I want to fill rows in this table: > newtest[10:15,] yrmos yearmo snow.sum snow.mean

Hi all, I am trying to run an autologistic model using the function errorsarlm from spdep package. **I built an XY matrix extracting the two colums from matriz** coords1<-matriz[matriz$casos1==1, c(4,5)] coords1<-as.matrix(coords1) **I identify neighbours of region points** nb20<-dnearneigh(coords1,0,20,longlat=TRUE) ** I build a neighbours list with spatial weights**

Hello everyone, I am working for a few days already on a basic algorithm, very common in applied agronomy, that aims to determine the degree-days necessary for a given individual to reach a given growth stade. The algorithm (and context) is explained here: http://www.oardc.ohio-state.edu/gdd/glossary.htm , and so I implemented my function in R as follows: DD <- function(Tmin, Tmax, Tseuil,

I am trying to explore nlmer by running some nlme examples from Pinheiro & Bates (2000). I do not seem to find information how to specify fixed effects covariates to nlmer models. Specifically, I tried to run the "Carbon Dioxide Uptake" example from p. 368 onwards in the PB200 book. The model without fixed effects covariates runs well but how to tell nlmer to include Type and

Estimados erreros, Estoy intentando entender como calcula el paquete dismo ( https://cran.r-project.org/web/packages/dismo/index.html) un coeficiente de variación. Os pongo un ejemplo: tmin <- c(10,12,14,16,18,20,22,21,19,17,15,12) # temperatura mínima media mensual de un año tmax <- tmin + 5 # temperatura máxima media mensual de un año prec <- c(0,2,10,30,80,160,80,20,40,60,20,0)

Hi, I turn to the help list after spending hours on the package help, looking online, asking colleagues and trying various versions on R itself. The work I need help on involves a confidentiality contract, so I am limited in details on the specific model I used. However, my problem is really simple in essence, and is described below. The theoretical model for response is roughly : y =

Hola, en la misma definici?n de la funci?n: # P15. Precipitation Seasonality(Coefficient of Variation) # the "1 +" is to avoid strange CVs for areas where mean rainfaill is < 1) p[,15] <- apply(prec+1, 1, cv) Un saludo, Jorge On Martes, 19 de Junio de 2018 13:07:27 Marcelino de la Cruz Rot escribi?: > Hola Jaume: > > Si miras el c?digo de biovars() ver?s que la

Hi, I am using mgcv:gam and have developed a model with 5 smoothed predictors and one factor. gam1 <- gam(log.sp~ s(Spr.precip,bs="ts") + s(Win.precip,bs="ts") + s( Spr.Tmin,bs="ts") + s(P.sum.Tmin,bs="ts") + s( Win.Tmax,bs="ts") +factor(site),data=dat3) The total deviance explained = 70.4%. I would like to extract the variance explained

I have one data frame with a column of dates and I want to fill another data frame with one column of dates, one of years, one of months, one of a unique combination of year and month, and one of days, but R seems to have some problems with this. My initial data frame looks like this (ignore the NAs in the other fields): > mans[1:10,] date loc snow.new prcp tmin snow.dep tmax 1

Message: 63 Date: Wed, 26 Jan 2005 04:28:51 +0000 (UTC) From: Gabor Grothendieck <ggrothendieck at myway.com> Subject: Re: [R] chron: parsing dates into a data frame using a forloop To: r-help at stat.math.ethz.ch Message-ID: <loom.20050126T052153-333 at post.gmane.org> Content-Type: text/plain; charset=us-ascii Benjamin M. Osborne <Benjamin.Osborne <at> uvm.edu>

I have a set of modeled climate data recorded at irregular intervals. The format of the data is such that there are monthly measurements for the years 2000, 2020, 2050, 2080, etc. Therefore I have 12 regular records, a skip of some number of years, then 12 more monthly records, another skip, and so on.... I created a dataframe from .txt with the read.table() command. For starters I need

hi! i send again my question because there was a problem earlier that someone did not see my attached file. If you really can't download it, this is the attached file. Please help me how to convert this S plus file to R. Is there a quick method to do it? I don't have an S plus installer here. --------------------------------------------------- # Computes a possible choice for

Two questions: 1. Is the order of the dimensions shown what is shown if you look at str(ncin) - I mean shown at the end where it describes the variable and its dimensions? 2. Is you problem how to subset the netcdf file, how to write to the .csv file, or both? -Roy > On Aug 28, 2017, at 2:21 PM, Eeusha Nafi <eshad002 at gmail.com> wrote: > > I have a series of nertCDF files

I have a series of nertCDF files containing global data for a particular variable, e.g. tmin/tmax/precipiation/windspeed/relative humuidity/radiation etc. I get the following information when using *nc_open* function in R: datafile: https://www.dropbox.com/s/xpo7zklcmtm3g5r/gfdl_preci.nc?dl=0 File gfdl_preci.nc (NC_FORMAT_NETCDF4_CLASSIC): 1 variables (excluding dimension variables):

Hello, The following code of mine is giving the error: Error in integrate(fx[[2]], 0.056, 1) : maximum number of subdivisions reached Can anyone help? Thanks and Regards. Swagato -------------------------- fv<-vector("list") fx<-vector("list") v<-0 c<-0 n<-0 NOV<-0 i<-0 while(n<200){ fv[[1]]<-function(x)1 #prior function

HI: I need ideas on how to make this code shorter (maybe with a second loop?). The code as it is works, but in this case I only have 14 samples, but it will become insane with more, so I need a way to make it more automatic. The problem is that the output from ts1, ts2, and so on is a vector with more than one value, so I do not know how to solve this. Thanks Prenewbie The code is the

Hi there, I am trying to compare nonlinear least squares regression with AIC and anova. The simplest model is one nonlinear curve, and in the more complex model I have a categorical variable (producing parameter estimates for four curves). Both models run fine, but when I try to produce an AIC value for the second model I get the error: > AIC(pow.nls1) [1] 114408.3 > AIC(pow.nls2) Error in