similar to: problem with RCurl 0.8-1 installation on Debian Etch

Dear R-developers, I am having trouble installing rJava on R 2.8.0 / debian etch. What goes wrong? I am happy for every advice. Best, Christian > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/nfs/compdiag/package/R/lib/bioconductor/release_2.3/x86_64' --- Please select a CRAN mirror for use in

Dear R developers, I just compiled the latest version of R (2.12.1) and noticed that 'libRblas.so' is missing in the '/x86_64/src/extra/blas' subdirectory of my R-installation. Did I miss ongoing discussions on the Mailinglist about this or might it be a local problem? Thanks for this brilliant software. Best Christian -- Christian Kohler Institute of Functional Genomics ~

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >

Hello everybody, by the way, speaking about the r-cran-rcurl package in Ubuntu, the versions in trusty and vivid are linked by error to the "NSS" flavour of libcurl3 instead of the "OpenSSL flavour", which cause at least problems when using the CRAN devtools package. A bit more details are available in the Debian bug tracking system (https://bugs.debian.org/786473). I am not

Dear list members, as I am new to R, I would kindly like to ask for your help. I checked a package with the 'R CMD check' command and all worked out well, (only 'OK' status). Loading its vignette afterwards with 'source("package.Rcheck/inst/doc/vignette.R")' yields a message saying that several (well, in my case more than 50) warnings still exist and can be

I can compile RSPython without difficulty, been when I try to load it, I get the error messages below. Also below are some cryptic warnings I get on R boot (in case these are pertinent) and my sessionInfo(). Any help is appreciated. Thanks, Mark Warning messages: 1: In .updateMethodsInTable(fdef, where, attach) : Couldn't find methods table for "conditional", package

Hi Patrick, Greetings from !(sunny) Pittsburgh. What's the scoop on RCurl on windows (XP)? I've tried to install RCurl_0.92-0.zip and RCurl_0.9-3.zip, with both R 2.7.2 and R 2.8.0 from the RGUI (utils:::menuInstallLocal), and get the error "Windows binary packages in zipfiles are not supported". which (according to google's one and only hit) comes from a perl script.

I am using heatmap with the arguments below. The title size stays the same no matter what I set cex.main to. Is this expected? Can I adjust the title size in heatmap? Also, the position of the main title is at the very upper edge of the output and if I use a "\n" to stack the title the upper line is out of bounds and doesn't show up. I am outputting to pdf. Any help? Thanks,

What do you have installed as far as libcurl goes? Would you mind listing your packages and greping for libcurl entries. Perhaps I need some libcurl debs installed when I install r-base? On Thu, Nov 5, 2015 at 11:34 AM, Dirk Eddelbuettel <edd at debian.org> wrote: > > On 5 November 2015 at 11:11, Michael Coyne wrote: > | Hello, > | > | I'm install R from a package off of

One of the curl maintainers has pointed me to this bug report on Launchpad that may affect r-base users: https://bugs.launchpad.net/ubuntu/+source/curl/+bug/1754294 The issue is that ubuntu now ships both libcurl3 (gnutls, nss) as well as libcurl4 (openssl) which cannot be installed concurrently. Because r-base-core depends on libcurl4, it will conflict with any other packages depending on

I am having trouble getting tcltk package to load on openSuse 10.2 running R-devel. I have specifically put my /usr/share/tcl directory in my PATH, but R doesn't seem to see it. I also have installed tk on my system. Any ideas on what the problem is? Also, note that I have some warning messages on starting up R, not sure what they mean or if they are pertinent. Thanks, Mark Warning

Thanks for the advice. Going to look into this more this evening and hopefully get everything working. Thanks again! On Thu, Nov 5, 2015 at 11:56 AM, Dirk Eddelbuettel <edd at debian.org> wrote: > > On 5 November 2015 at 11:44, Michael Coyne wrote: > | What do you have installed as far as libcurl goes? Would you mind > | listing your packages and greping for libcurl entries.

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

I have used merge regularly and thought I understood how it worked, but I must not. I have two dataframes with identical colnames from two different experiments, TL01 and LC01. Each dataframe has a column named "Entrez.Gene", which I have converted to "as.character" just to make sure merge is not looking at factor levels. Because I have done some filtering, the Entrez.Gene

On Sat, Apr 28, 2018 at 2:38 PM, Dirk Eddelbuettel <edd at debian.org> wrote: > That said, thanks for the heads up. We'll see what comes out of it. My Debian > package also still uses curl3, but I noticed that there is a whole formal > transition going on -- so 'our' r-base-core package would get rebuilt anyway If I understand it correctly this is a problem only in

Dear R users and experts, I am current running a program (a series of commands) in R. such as: A <- as.matrix(read.table("C:/LP.txt")); a=which(memb==q); b=a; B=as.matrix(A[a,b]) LS=sum(B)/2; TL=sum(A)/2 i<-c(1:NN); D=sum(A[a,i]); how can i obtain the CPU time used for these commands ? I have seen the system.time function but i am not sure how to use it. Could anyone help

For precise, from which you should really upgrade, you need to look at the very `help(options)` I pointed you to and select _the external curl or wget_ as the method for `download.file()`. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

I am getting the following error while trying to install the RCurl library. I have checked that the curl and the libcurl.so.3 is already installed in the /usr/bin > install.packages("RCurl") --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.hostingzero.net/src/contrib/RCurl_0.9-3.tar.gz' Content type

I have some problem in running R-cran's Demography package. The hmd.mx function need Rcurl. I tried to install RCurl, but meet the following error: ********************************************************************* ... * installing *source* package ?RCurl? ... checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package ?RCurl? * removing