similar to: 00LOCK error on site-library

I have been working with my sysAdmin to get R-devel up and running with 64-bit compilation on our PowerPC cluster. We've got the base install to compile with the following flags: LDFLAGS=-m64 FFLAGS="-m64 -mpowerpc64" FCFLAGS="-m64 -mpowerpc64" CFLAGS="-m64 -mpowerpc64" ../configure --prefix='/N/hd03/mkimpel/BigRed/R_HOME/R-devel/R-build'

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >

R developers: I have some parallel C code, written with the MPI library, that I would like to call from R, but I get the error message below. cocite.mat.true.parallel.so compiles without complaint and I have MPI in my path, but R isn't recognizing one of the MPI symbols. I have a feeling that this is going to be tricky, but I need to get this to work. Helpful suggestions? I'd be

Had some packages fail install so I updated to today's R-beta release. On updating packages the following packages still fail. sessionInfo follows. Mark Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'MANOR' had non-zero exit status 2: In install.packages(update[instlib == l,

I have identical R.profiles and R_HOME directories set up on both my local machine and a remote linux cluster. To keep my libraries and R install separate, I use a site-library on both machines. The first line of my .Rprofile is: '.libPaths(new= "~/R_HOME/site-library") #tell R where site-library is' Until R-2.6.0 this was working fine on both machines, but since I have been

Hi, since a couple of days ago I see failures when using R CMD INSTALL -l lib path-to-src/pkg.tar.gz This occurs in automated library updating via a shell script and is caused by the immediate preceding call to leave an 00LOCK folder even though the package installation of that call succeeded. This occurs at random (no obvious/systematic correlation to package name or or such) and only for

Martin, Well, thanks for jumping in! We need all the help we can get ;) I changed the execute bit as you suggested and recompiled, no luck, still the same error message. Below is the output you wanted me to look at, its a bit beyond me so I include both a brief grep summary and then the whole enchilada. I do note that my output is different from yours, but I'm not sure how to interpret. I

Martin, Well, thanks for jumping in! We need all the help we can get ;) I changed the execute bit as you suggested and recompiled, no luck, still the same error message. Below is the output you wanted me to look at, its a bit beyond me so I include both a brief grep summary and then the whole enchilada. I do note that my output is different from yours, but I'm not sure how to interpret. I

Some time ago I had difficulty installing RBGL with Ubuntu Hardy on R-2.7.0 and the problem was attributed to an with BGL. I got some very helpful advice and posted a script to fix the problem by hacking the RGBL source code: dateTue, Jan 15, 2008 at 2:16 PMsubjectRe: [R-sig-Debian] trouble installing building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64mailing

Subject pretty much says it all. I am running 64-bit Ubuntu 8.04, i.e. Hardy Heron, have openmpi installed, and get the following error message with attempted install of Rmpi. sessionInfo() follows. Mark checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes

I followed the instruction of building R package on PC by Peter Rossi. I got problem when I tried to build a R package from his example, test.zip. The problem occurs when I tried to R CMD check test the screen stops at D:\Rpackagebuild\Rossi_test>R CMD check test * checking for working pdflatex ... OK * using log directory 'D:/Rpackagebuild/Rossi_test/test.Rcheck' * using R version

Subject pretty much says it all. Wonder if there is there is some code in XML that the new gcc doesn't like? See output below: * Installing *source* package 'XML' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking

Switched back to R-devel tonight after using R-2.6.1 for awhile and when I updated my devel packages Matrix installation failed. Not critical for me but thought I should report it. I am using Ubuntu Gusty AMD64 OS. Tail of install output and sessionInfo follows. Mark Loading required package: methods Loading required package: lattice Attaching package: 'Matrix' The

I just downloaded R-devel and when loaded it immediately segfaults. I'm not sure how much or what sort of diagnostic info and can provide, but below is my build script, my console output, and the output of uname -r. I am currently dependent on the development version of a package, so I'd like to get R-devel up and running if possible. I am sure there is more info I can provide, but before

Dear cateGOry experts, hyperGTest documentation states that YEAST cannot be used as 'annotation' when evaluating gene ontology representation status for a given set of 'geneIds'. Because I am using a custom print I believe I need to create my own data package to use as the annotation file for 'annotation'. Can someone please describe how to make a data package that will

Hi, Works fine with Win2K or XP, but when I go to a Win98 system. "You must supply a password to make this connection: Resource: \\bigred\ipc$ password: i put in all the password, but none of them work. Any advice would be greatly appreciated. -Paul Hong

I can compile RSPython without difficulty, been when I try to load it, I get the error messages below. Also below are some cryptic warnings I get on R boot (in case these are pertinent) and my sessionInfo(). Any help is appreciated. Thanks, Mark Warning messages: 1: In .updateMethodsInTable(fdef, where, attach) : Couldn't find methods table for "conditional", package

Hi, Design isn't strictly an R base package, but maybe someone can explain the following. When lrm is called within a function, it can't find the dataset dd: > library(Design) > age <- rnorm(30, 50, 10) > cholesterol <- rnorm(30, 200, 25) > ch <- cut2(cholesterol, g=5, levels.mean=TRUE) > fit <- function(ch, age) + { + d <- data.frame(ch, age) +

Hi, I'm trying to use Frank Harrell's Design:::ols function to do regression of y (numeric) on the interaction of two factors (x1 and x2), but Lapack throws an error: > library(Design) ... > load(url("http://www.csse.unimelb.edu.au/~gabraham/x")) > ols(y ~ x1 * x2, data=x) Error in chol2inv(fit$qr$qr) : 'size' cannot exceed nrow(x) = 20 > traceback()