similar to: Adehabitat package question - trying to generate animal home ranges

Hi,  I am looking to perform a kernel density analysis in R, following the script that a friend of mine is using successfully. However, unlike for her, when I enter >kud<-kernelUD(data, h="LSCV"), R crashes and closes every time. This does not happen when I perform a different kernel analysis (>kud<-kernelUD(data)).. I have tried to un-install and re-install R, but it still

Hello, I've been trying to calculate home range sizes (for Icelandic geese!) using minimum convex polygons with the adehabitat package. I've tried to use the R code shown by demo(homerange) in adehabitat and when that didn't work I've fiddled around with it but to no avail...Below is the output of the demo that I've attempted to follow, followed by a subset of my data (for one

Dear all, I have uploaded to CRAN the version 1.7 of the package 'adehabitat'. Significant changes are listed below: * The Brownian bridge kernel estimation algorithm has been greatly improved. It now takes more than 80% less time than the previous version. A new function "liker" has also been added, which estimates the one of the two smoothing parameters of the bridge

Dear all, I have uploaded to CRAN the version 1.7 of the package 'adehabitat'. Significant changes are listed below: * The Brownian bridge kernel estimation algorithm has been greatly improved. It now takes more than 80% less time than the previous version. A new function "liker" has also been added, which estimates the one of the two smoothing parameters of the bridge

Dear Herman, We had the same problems over here. The problem seems to be related to Windows Hotfix KB828741. Removing the hotfix through the control panel solved it for us. Greetz, Jerome Borsboom >>BTW, i use samba 302 & 303 pre2.. >> >>Thursday, April 22, 2004, 2:33:16 PM, you wrote: >> >>CBM> well the subject tell's it.. >> >>CBM>

R List, I am seeking help in the area of kernel smoothing. I am attempting to use LSCV values to conduct 2d and weighted 2d kernel smoothing (imported from an ArcMap shapefile), and have been unable to find tools to conduct such analysis in R. My biggest problem is determining the LSCV value and finding a tool that does weighted smoothing, as there are obviously many different packages that will

Dear R experts, I'm using the adehabitatHR package in order to perform a kernel analysis and estimate the home range of my input data (GPS relocations of 42 individuals). I've done the analysis for one of the individuals and it worked perfectly (see code below). But now I'm trying to use a list and call the function lapply to do the same thing through all the 42 individuals (also see

Hello, I am working through examples of generating Home Range using the adehabitatHR package. Everything is going fine until I load the code for the kernelUD function, it looks like this; > data(puechabonsp) > kud <- kernelUD(puechabonsp$relocs[,1], h="href") > kud I then get an error of; Error: could not find function "kernelUD" Any thoughts on what I am

Dear all, I apologize for using the list for a job ad, but hope it can interest some of you. We are urgently seeking a web developer comfortable with Rails and AJAX within a bioinformatics team at CBM, in Trieste, Italy. CBM is a new research center with very active genomics, bioinformatics, imaging and nanotechnology laboratories. We are seeking a talented individual who is not only comfortable

Thanks in advance. Nowadays I just calculate the bandwidth h of cross validation in kernel smoothing using R language. And I just looked up the usage of function, which is lscv(x,......, exact=FALSE) My question is what does "........" stand for and mean? do you mind specifically explaining it for me? Thanks Regards -- View this message in context:

Dear all, I have just uploaded 4 new packages on CRAN, which are on the long term designed to replace the "old" package adehabitat: * adehabitatMA: functions to perform spatial operations (morphology, buffer, etc.) * adehabitatHS: functions for the analysis of habitat selection by wildlife * adehabitatHR: functions for home range estimation of animals * adehabitatLT: functions for

Dear all, I have just uploaded 4 new packages on CRAN, which are on the long term designed to replace the "old" package adehabitat: * adehabitatMA: functions to perform spatial operations (morphology, buffer, etc.) * adehabitatHS: functions for the analysis of habitat selection by wildlife * adehabitatHR: functions for home range estimation of animals * adehabitatLT: functions for

Hi List, I'm having problems installing certain packages. When I try to install fields, I get the output below. I have highlighted the what I perceive as the first error (spam seems to be a dependency of fields). Can I assume this is causing dependency problems for fields, which fails to install at the end, or is there a deeper problem? I run Ubuntu Karmic Koala on R 2.9.2. 2>

I am returning to using R after a little time away. Saw some great new functions in the fields package and decided to upgrade. Everything seems to go fine until I tried to actually load the package, when I get an error: >library(fields) Error in parse(file, n, text, prompt) : syntax error on line 227 And (of course) I am unable to access any of the functions in the fields package. Below is

Hello to everybody, I need to know the Smoothing Parameter to obtain Home Range of an animal through the Area Kernel. I have 200 locations with x and y. How can I obtain the Smoothing Parameter with R for LSCV, CV and Href method??? Thank you. -- View this message in context: http://www.nabble.com/Smoothing-Parameter-Kernel-tp26037651p26037651.html Sent from the R help mailing list

Thank you for providing the example code... for the request of running it multiple times it would have helped if you could have confirmed that the example ran through without errors... there were a lot of mistakes in it. Look into using the reprex package to check your example next time. I don't do this kind of analysis... I really don't know what to expect from the functions. The

I updated to 2.3.0 today, and now I'm getting these entries in my log: Jul 7 14:26:20 mail-cbf dovecot: anvil: Error: connect limit: disconnection for unknown pid 17687 + ident lmtp/backup at backup.invalid Jul 7 14:26:20 mail-cbf dovecot: anvil: Error: connect limit: disconnection for unknown pid 17659 + ident lmtp/backup at backup.invalid Jul 7 14:26:21 mail-cbf dovecot: anvil: Error:

---------------------------------------------------------------------------- ---- FULL RSYNC LOG ---------------------------------------------------------------------------- ---- /usr/bin/rsync -av --force --delete-excluded --exclude-from=/usr/local/etc/snapback/snapback.exclude -e ssh --delete peru.cbm.mercyships.org:/ /home/backup/peru/hourly.0/ <bunch of lines deleted> wrote 873039

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Dear list members I am calculating kernel home-ranges and would like to visualize them with the function image(). The xy-values consist of longitude and latitude data. example:       x        y 36154.97 355143.0   R-code: xy<-hares[,c("x","y")] id<-hares[,"date"]   (ud1 <- kernelUD(xy, id)) ud2 <- getvolumeUD(ud1) image(ud2)   My problem is that the image