similar to: passing args to R CMD BATCH in win 2000

Please, help with announcing an error from Rterm: I am calling R from an Excel VBA and noticed that if there is an error nothing conspicuous happens. I would like just a popup window when R cannot finish cleanly. The "ret " value returned from Shell is useless in determining what happened. Thank you all. ***************************** Public Sub Repo() ds = InputBox("Type in

Apologies for asking about this, but I don't quite understand how this works after looking through the FAQ and the Help archives. Let's say I want to pass "1000" as an argument to R. I did the following: >R CMD BATCH --1000 infile outfile When I do print( commandArgs() ), I see [1] ".../R.bin" "--restore" [3] "--save"

Is there a way to append to the outfile when using R CMD BATCH? My code, right now, is: R CMD BATCH --slave --vanilla '--args place .2 -.1 .9 .6' StratificationSimulation example.output Everything else is working the way I'd like it. The first few lines of code of my script file are: options(echo=FALSE) cmd_args = commandArgs() print (cmd_args) #d <-

Dear R experts: I am a bit stymied by how the argument picking-off works in R batch file usage. $ cat commandArgs.R cat(" Command Line Arguments were ", commandArgs(), "\n"); $ /usr/bin/R CMD BATCH commandArgs.R --args 1 2 3 $ /usr/bin/R --args 1 CMD BATCH commandArgs.R ... I am now getting into interactive mode ?! I guess it really is skipping the rest of the command line

Hi, I'd like to spawn of a new R process from within R using system(), e.g. system("R -f myScript.R"). However, just specifying "R" as in that example is not guaranteed to work, because "R" may not be on the OS's search path. What is the best way, from within a running R, to infer the command (basename or full path) for launching R in way that it works on

R Team: This is most likely a trivial question, but after searching docs for several weeks and digging through Rweb and RCGI, I could not clearly identify the method to call an R method from Linux or Win32 systems and send the output to a file. I would like to implement R as part of an online client-server application for a geographically spaced engineering team an would like to know how to run

Hi, I am struggling with using R CMD BATCH command. Kindly suggest solution to the following problem. I have a function named CinC with accept two input parameters. This can be shown as: CinC <- function(start, end) where start and end both are character strings. Please suggest me how can I run this function using command R CMD BATCH. Currently I am trying to do like this -> R CMD

Hello list Is there a way of identifying from within R whether a script has been source(d) from Rgui.exe or via Rscript.exe in batch mode? For the code I have I use the commandArgs() function to pick up command line args when running in batch mode via Rscript.exe However I like to get the code working manually first using source("MyRCode.r") I'd like to be able to put something at

Hi R-hackers I try to write a batch (in Windows, i have to use!) with Rcmd BATCH D:\Test.R D:\Test.Rout and Rterm.exe --no-restore --no-save < D:\Test.R > D:\Test.Rout. In my file Test.R are any tk-codelines (like: Window1 <- tktoplevel(); ... tkbutton...). It works not interactifly, what is written in Rcmd BATCH --help. Exist there a way to do it all the same? Please help...

Dear all, In R<=1.6.2 I usually used the following code (in DOS prompt) to run R in batch mode C:\documents> Rcmd BATCH myfile.R and I could see the results (including warning messages) in the file myfile.Rout In R.1.7.0 I'm experiencing the followings: (1) even if I type "Rcmd BATCH myfile.R myfile.Rout", no file myfile.Rout is created, but just a "&1" file

Hi, I would like start R in BATCH mode and submit my own parameters. Or in other words, I would like to specify variables from the command line and execute a script using those. I have been looking at commandArgs and calling R from the command line under bash: R CMD BATCH --no-save --args -filename="$filname" -- r-test.R r-test.Rout The problem here is, if $filename contains

I wish to use R CMD BATCH to run a small R function which reads a text file and plots a single graph to a PDF file. > version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

Hi, For example, I have several variables in php, like var1 = 1, 2, 3, 5, 6 var2 = 3, 1, 8 var3 = 8, 10, 4, 0, 9, 1 I sent the arguments to R, with this line: '/usr/bin/R --vanilla --slave --args '.$var1.' '.$var2.' '.$var3.' < script.r' In my "script.r" I can read the arguments whit this line: args=(commandArgs(TRUE)) args=as.numeric(args) args

Hi Community, I have a question about how to pass command line parameters to R script running in the batch mode. The problem is: there is a banch of data files which are to be processed by R script called from a web-server, i.e. in the batch mode. The web server generates data files and passes their names calling 'R CMD BATCH' one by one for every file. Now the question is how to

Hi Everyone, I am a new R user and trying to run R jobs in batch mode. Robert Muenchen (2009), in his book "R for SAS and SPSS Users", has suggested writing a small batch file like mR.bat as shown below: "C:\Program File\R\R-2.10.0\bin\Rterm.exe" --no-restore --no-save < %1 > %1.Rout 2>& 1 Could anyone tell me in which directory or subdirectory I should

Dear R-core Team, As Thomas Lumley pointed out in one of his e-mails one can use commandArgs() to get a copy of the command line arguments supplied when R session was invoked and then use grep to extract parameters of interest. His solution works very well if the custom options are passed by names, e.g. --my-option=value, but what if one wants to pass parameters by their positions. Then it's

hello! I'm trying to make a very simple calculation using R that would called from bash with two parameters, the names of the input and output files. the first one is just an 4 by 100 numerical table- the function finds the index of the maximal elements in each columns and writes it into the output file. I cannot deal somehow with passing the parameters to the function it works from R with the

Hi all, I need to run a program (asreml) thousands of times and each time I have to provide a slightly different dataset. Because I have to run asreml under Windows (DOS or scripts) environment, I have trouble to pass a command variable (or pointer variable or %counter in the following example) to R program so at each counter R can generate a different data set for asreml to run. Any

I am working on a Windows XP machine with R 2.10.1 and a recent installation of MiKTeX 2.8. I use LyX (www.lyx.org) to write documents and have it set up to run Sweave, Stangle, and make the PDF through R using a batch script and a MakeSweave.R file. This system worked just fine until I ran some MiKTeX updates yesterday. This is a bit embarrassing as I helped produce a "How-to" guide to