Displaying 20 results from an estimated 200 matches similar to: "install error for RBGL_1.12.0 on linux ---2"
2010 Jul 12
2
R-2.11.1 build and 'so' libraries withouth the 'lib' prefix
Greetings,
I have a computer with the following setup:
1)cblfs (pure 64-bit (amd64) linux), kernel2.6.34 gcc4.4.2
2)R-2.11.1
I compiled R with BLAS and lapack using the switched ( --with-blas="-
lpthread -latlas -lfptf77blas"
--with-lapack="-llapack -lcblas" ).
(( http://cran.r-project.org/doc/manuals/R-admin.html#Linear-algebra) )
Prior to compiling R-2.11.1
sh
2007 Jul 30
0
install error for RBGL_1.12.0 on linux
Dear all,
I meet error when installing the newest Bioconductor packages 2.0 for R
2.5.1.
the enviroments are as bellow:
> sessionInfo()
R version 2.5.1 (2007-06-27)
i686-pc-linux-gnu
locale:
2012 Apr 06
1
Building R on Solaris (OpenIndiana) with gcc 4.6.2 for amd64 target - relocation problems solved
Hello,
the "R Installation and Administration" handbook states in Section C 5.1:
For ?amd64? the builds have failed to complete in several different
ways, currently with relocation errors for libRblas.so.
To fix it: add '-shared' to the SHLIB_LDFLAGS, SHLIB_CXXLDFLAGS and
SHLIB_FCLDFLAGS before starting configure.
So the complete set of variables' values sufficient to
2001 Dec 05
3
trouble with R CMD INSTALL for building my own library
Hi,
I have built a library that consists of a piece of C code and some R
functions.
To build it into a library that I can load using library() command, I
have followed "Writing R Extensions"
and made sub-directories such as mylib/R and mylib/src. But when I run R
CMD INSTALL mylib, nothing seems to
be happening with src directory, i.e., no C compiling. I have probably
missed
some key
2001 Dec 05
3
trouble with R CMD INSTALL for building my own library
Hi,
I have built a library that consists of a piece of C code and some R
functions.
To build it into a library that I can load using library() command, I
have followed "Writing R Extensions"
and made sub-directories such as mylib/R and mylib/src. But when I run R
CMD INSTALL mylib, nothing seems to
be happening with src directory, i.e., no C compiling. I have probably
missed
some key
2010 Jun 08
3
Question on trying to build R 2.11.1 on Tru64(aka OSF1) system
Hello,
I am trying to build the R-2.11.1 software for university faculty to use in
research projects on a DEC/Compaq/HP AlphaServer model GS160 16CPU/64GB memory
running Tru64Unix aka OSF1 version 5.1B-5.
Is it known whether it is possible to build the R-2.11.1 software on the
platform I am using?
In my attempts to build the R-2.11.1 software, I first used the native C
and Fortran 77/90/95
2007 Jul 30
0
g++ verfsion
Hi, Li,
Thanks for reply.
It is strange that I used RBGL_1.6.0 successfully on the same linux
system with R 2.3.1 before!
After trying to install R 2.5.1, the RBGL_1.12.0 failed to be installed.
Then, I uninstalled R. Delete the directory R/lib/.
Installed R.2.3.1 again. And run getBioC1.8.5 for R 2.3.1 to download
the three packages
graph_1.10.6, RBGL_1.12.0 and Ruuid_1.10.0.
But still
2009 Feb 21
1
Install failure (PR#13545)
Hello:
Encountered a problem installing R on
CentOS release 5.2
This is a 64bit OS
I need to know if this will work on this server or do I need to change OS>
Thanks
Bob
I downloaded the source ( R-2.8.1.tar.gz ) due to no release being available
for CentOS.
My ./configure --with-x=no --with-readline=no R_PAPERSIZE='letter'
Failed:
./configure --with-x=no --with-readline=no
2009 May 27
1
R package installation (PR#13726)
Full_Name: Lukasz Andrzej Bartnik
Version: 2.8.1
OS: RHELS 5.2
Submission from: (NULL) (194.181.94.250)
Compile R for 32 bit on a 64 bit machine:
unset LD_LIBRARY_PATH
unset R_LD_LIBRARY_PATH
export CC="gcc -m32"
export CXXFLAGS="-m32 -O2 -g"
export FFLAGS="-m32 -O2 -g"
export FCFLAGS="-m32 -O2 -g"
export OBJCFLAGS="-m32 -O2 -g"
export LIBnn=lib
2004 Jun 10
1
question about similarities cluster using hierclust
my major is bioinformatics, and i'm trying to cluster ( agglomerate
the closest pari of observations ) in R.
i have already got my own similarities metric, but do not know how to
clust it based on similarities instead of dissimilarities.
since the help document of hierclust mentions the parameter "sim",
which seems good to me, but it doesn't appear in the code of
hierclust()
2004 Jun 10
2
question about hierclust {multiv}
my major is bioinformatics, and i'm trying to cluster ( agglomerate
the closest pari of observations ) in R.
i have already got my own similarities metric, but do not know how to
clust it based on similarities instead of dissimilarities.
since the help document of hierclust mentions the parameter "sim",
which seems good to me, but it doesn't appear in the code of
hierclust()
2009 Jul 23
1
problem building R 2.9.1 from source on RHEL 4 (x86_64)
I am building from source on RHEL 4 and have run into a
problem while running "make check":
running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1
make[3]: Leaving directory `/opt/R/R-2.9.1/tests'
make[2]: *** [test-Specific] Error 2
make[2]: Leaving directory `/opt/R/R-2.9.1/tests'
make[1]: *** [test-all-basics] Error 1
make[1]: Leaving
2002 Jan 15
0
errors intalling splancs and sgeostat
I installed R-1.4.0 and then updated all the packages I have, using
update.packages(). I got an error for splancs and sgeostat. Trying to
install them 'manually' with R CMD INSTALL, I got the following
errors.
1) for splancs:
Tue<15:26>library[82]#R CMD INSTALL splancs_2.01-5.tar.gz
Installing *source* package `splancs' ...
libs
f95 -PIC -xO5 -dalign -xlic_lib=sunperf -c
2006 May 01
6
R-2.3.0 make error
Dear list,
When compiling the R-2.3.0 on FC4 x86_64, I got the following errors:
make[3]: Entering directory
`/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main'
gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o
CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o
arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o
character.o coerce.o colors.o complex.o
2011 Jul 04
1
R CMD SHLIB with ifort
Hi,
I am running Linux (64 bit) R, compiled under gnu compilers. I am looking
to compile a Fortran program with the ifort (the intel compiler) and then be
able to import that as a library into my version of R. I am using the
flags FC=ifort and SHLIB_FCLD=ifort, however ifort does not seem to
recognize the libR.so file.
Does any one have experience with this/know of a a way to load an ifort
2010 Mar 31
1
How to calculate fold change and its confidence interval
Dear all,
I am reading the book "statistic analysis of gene expression microarray
data" by Terry Speed .
On page16-17, there is an example that I can not repeat.
The content can be found using below linkage:
2009 Feb 21
1
R-devel/Linux x64/Sun Studio 12: Problem with Matrix
Dear Developers,
motivated by the new Sun Studio checks I compiled R-devel and several of
our packages with Sun Studio 12 on Fedora x64.
Everything worked fine and R-devel runs, with the exception of package
Matrix where compilation crashes with the following message. The error
occurs during building of the recommended packages and also if Matrix is
compiled separately:
[...]
CC -G -lCstd
2009 Mar 21
2
How to change Rlapack by lapack (for rpy2 installation)?
(I asked an earlier question on the rpy2 installation
to the rpy2 list, the solution there was to
edit the setup.py script, but this looks beyond what I can do unless
someone tells me exactly what to modify).
I have R 2.8.1 on 2 machines running ubuntu 8.04
(packages R-base and R-base-dev, among others, installed using Synaptic)
and while the installation
of rpy2 went fine on machine1, failed on
2007 Aug 19
2
Installing dependent packages
Hi all,
When installing ggplot2 on with install.packages("ggplot2", dep = T),
the colorspace dependency doesn't get installed (see below for
transcript from R session). The relevant lines from my description
file are:
Depends: R (>= 2.4), grid, reshape (>= 0.8.0), proto, splines, MASS,
RColorBrewer, colorspace
Suggests: quantreg, Hmisc, mapproj, maps
Have I done something
2019 Mar 02
0
Using a different compiler when creating a package on Windows
Hello!
I am updating to the R-devel version as of 2/28 and recompiling with
OpenBLAS. I got that to compile nicely.
I am now updating a package that uses the OpenBLAS and the PGI compiler,
which has changed too.
I just changed the path names in Makevars. Here is the Makevars file.
FC= d:/PGI/win64/18.10/bin/pgf90
F77= d:/PGI/win64/18.10/bin/pgf90
CC = d:/PGI/win64/18.10/bin/pgcc
FFLAGS=