similar to: random number generator in batch jobs

Hi R users, Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array: #!/bin/bash -ue #PBS -m ae #PBS -M my email #PBS -J 1-45 #PBS -A my username #PBS -N job name #PBS -l resources #PBS -l walltime cd $PBS_O_WORKDIR module load R/2.14.1 R CMD INSTALL -l /path/to/library spatstat R CMD BATCH

Hi R-users, I have a problem running my R code on a Linux cluster. What I did was write a .pbs file to instruct the cluster on what to do and how: #!/bin/sh #PBS -m ae #PBS -M uqlcatta@uq.edu.au #PBS -A uq-CSER #PBS -N job1_lollo #PBS -l select=1:ncpus=1:NodeType=fast:mem=8GB #PBS -l walltime=999:00:00 cd $PBS_O_WORKDIR source /usr/share/modules/init/bash module

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Hello! I noticed that in some cases clang generates sequence of AND+TST instructions: For example: AND x3, x2, x1 TST x2, x1 I think these instructions should be merged to one: ANDS x3, x2, x1 ( because TST <Xn>, <Xm> is alias for ANDS XZR, <Xn>, <Xm> -

using `opt --print-after-all -O3` I see that EarlyCSE is interpreting the call to `ceil` and constant fold: *** IR Dump After Early CSE *** ; Function Attrs: nobuiltin nounwind define i1 @do_test() #2 { Entry: %0 = call fastcc float @ceil(float 0.000000e+00) #6 %1 = call fastcc float @ceil32(float 0.000000e+00) #6 %2 = fcmp fast oeq float 0.000000e+00, %1 ret i1 %2 } So just running `opt

Unfortunately the DP MST helpers do not have much in the way of debugging utilities. So, let's add some! This adds basic debugging output for down sideband requests that we send from the driver, so that we can actually discern what's happening when sideband requests timeout. Since there wasn't really a good way of testing that any of this worked, I ended up writing simple selftests

Ok, thank you, I will implement it then. As far as I see this optimization should be done in AArch64LoadStoreOptimizer, is it right? From: Eli Friedman [mailto:efriedma at quicinc.com] Sent: Thursday, November 21, 2019 11:55 PM To: Kosov Pavel <kosov.pavel at huawei.com>; LLVM Dev <llvm-dev at lists.llvm.org> Subject: RE: [llvm-dev] [ARM] Peephole optimization ( instructions tst +

These plugins are both based on the same sparse array structure which supports a simple implementation of extents. --- common/sparse/sparse.h | 7 +- common/sparse/sparse.c | 37 ++++++++++- plugins/data/data.c | 16 ++++- plugins/memory/memory.c | 16 ++++- README | 2 + tests/Makefile.am | 2 + tests/test-data-extents.sh | 131

Attached is the very verbose ssh output. Just to be perverse, this time two nodes lost connectivity. The only thing I see is lines saying that the two connections are lost, although being honest I have no idea what everything else means. For reference, 8 ssh cinnections were being made at the same time for a 8x8mpi task. N.B., since the OS I am using does not have rsh, I am currently using the

On Mon, Jun 19, 2017 at 12:06 PM, Mehdi AMINI <joker.eph at gmail.com> wrote: > Hi, > > 2017-06-19 8:45 GMT-07:00 Andrew Kelley via llvm-dev < > llvm-dev at lists.llvm.org>: > >> Greetings, >> >> I have a Zig implementation of ceil which is emitted into LLVM IR like >> this: >> >> ; Function Attrs: nobuiltin nounwind >> define

Borrows heavily from the existing test-truncate-extents.sh (basically, adding another layer of nbdkit to prove that the nbd plugin doesn't change anything from what the truncate filter is already tested to do). Signed-off-by: Eric Blake <eblake@redhat.com> --- tests/Makefile.am | 3 + tests/test-nbd-extents.sh | 113 ++++++++++++++++++++++++++++++++++++++ 2 files changed, 116

The previous code duplicated a lot of common code for reading and writing the cache file per data field. This change simply factors out that common code. This makes it simpler to add new tests in future. This is just refactoring, it should have no effect. --- lib/qemu.c | 375 +++++++++++++++++++++++++++++++++++++++---------------------- 1 file changed, 238 insertions(+), 137 deletions(-)

I'm new to R so forgive me if this seems like a simple question: So I have table where the row titles are string variables. When I plot the data with rows along the x-axis, the data is ordered alphabetically as opposed to the order of the table. How can I preserve the row order of the table in the plot? Thanks in advance. -- View this message in context:

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

qemu feature detection takes about 95ms on my laptop. The overhead is almost all due to the time taken by the glibc link loader opening the 170+ libraries that qemu is linked to (×2 because we need to run qemu twice). Fixing that is seriously hard work. Therefore memoize the results of guestfs_int_test_qemu. This is keyed on the size and mtime of the qemu binary, so if the user changes the

The patch I posted last week to disable mandatory locking for readonly drives (https://www.redhat.com/archives/libguestfs/2017-September/msg00013.html) was wrong in a couple of respects. Firstly it didn't work, which I didn't detect because my tests were testing the wrong thing. Oops. Secondly it used a simple version number check to detect qemu binaries implementing mandatory locking.

Hi I am having difficulty getting the right format for a lattice plot I am trying to produce. Here is a pic of the plot as I get it now http://i235.photobucket.com/albums/ee37/scotrivers/lattice_plot01.jpg and here is the code I am using: RN<-read.csv("N:/data.dat",header=T) DATA<-RN[is.element(RN$age,0:3),] #select data on age