similar to: about R, RMSEP, R2, PCR

hi R help group, I have installed PLS package in R and use it for princomp & prcomp commands for calculating PCA using its example file(USArrests example). But How I can use PLS for Partial least square, R square, mvrCv one more think how i can import external file in R. When I use plsr, R2, RMSEP it show error could not find function plsr, RMSEP etc. How I can calculate PLS, R2, RMSEP, PCR,

Hello, I need help with a partial least square regression in R. I have read both the vignette and the post on R bloggers but it is hard to figure out how to do it. Here is the script I wrote: library(pls) plsrcue<- plsr(cue~fb+cn+n+ph+fung+bact+resp, data = cue, ncomp=7, na.action = NULL, method = "kernelpls", scale=FALSE, validation = "LOO", model = TRUE, x = FALSE, y =

Hello Sir/Mam I am Nitish Kumar Mishra from IMTECH, Chandigarh, India. I want to calculate the Principal Component Analysis(PCA), PLS of the input file and find top 30 PCAs of this file using PLS in R. I am asking regarding Linux(Red Hat 9) operating system. I have downloaded PLS from Crains site and try to installed it, but don't installed it. How I can download and installed PLS(for PCA and

All, I am working with NIR spectral data and it was great to find that the example in ?plsr also used spectral data. Unfortunately, I am having difficulty figuring out how the "yarn" dataset is structured to allow for the plsr model to read: library(pls) data(yard) yarn.oscorespls <- mvr(density ~ NIR, 6, data = yarn, validation = "CV", method = "oscorespls")

Hi, Help me, how I can Install made4(micoarray analysis tool) in R using linux OS. thanking you. -- Nitish Kumar Mishra Junior Research Fellow BIC, IMTECH, Chandigarh, India E-Mail Address: nitish_km at yahoo.com nitish at imtech.res.in

Hi R hep group member, I want to know that how I can call my data in R for princomp function. I want to calculate PCA of 200 descriptors of 4000 molecule(I am using Linux). How I can call this in R. Thanking you. -- Nitish Kumar Mishra Junior Research Fellow BIC, IMTECH, Chandigarh, India E-Mail Address: nitish_km at yahoo.com nitish at imtech.res.in

Hi R-listers, I would like to know how can i extract component no. when the RMSEP is lowest? Currently, I only plot it manually and then only feed the ncomp to the jack knife command. However, I would like to automate this step. Please let me know. Many thanks. Rgrds, [[alternative HTML version deleted]]

Version 1.2-0 of the pls package is now available on CRAN. The pls package implements partial least squares regression (PLSR) and principal component regression (PCR). Features of the package include - Several plsr algorithms: orthogonal scores, kernel pls and simpls - Flexible cross-validation - A formula interface, with traditional methods like predict, coef, plot and summary - Functions

Version 1.2-0 of the pls package is now available on CRAN. The pls package implements partial least squares regression (PLSR) and principal component regression (PCR). Features of the package include - Several plsr algorithms: orthogonal scores, kernel pls and simpls - Flexible cross-validation - A formula interface, with traditional methods like predict, coef, plot and summary - Functions

Hi~ helpers. I was surprised by R data type. I use to data type like table. I don't know R allow several data type such as list, number, matrix in the same matrix. I want to use plsr in pls package to anlaysis data. So, I read R help and example of plsr. that example show me that data as yarn has three colname as NIR, density and train. the NIR was 268(No. of col) X 71(No. of row)

Dear developeRs, I maintain a package 'pls', which has a main fit function mvr(), and functions plsr() and pcr() which are meant to take the same arguments as mvr() and do exactly the same, but have different default values for the 'method' argument. The three functions are all exported from the name space. In the 'pre namespace' era, I took inspiration from lm() and

Hi, I work with hyperspectral remote sensing data and I try to built a pls model with this data. I already built the model but if I try to calculate the RMSEP and R2 with a test data set I get the following error message: Error: variable 'subX' was fitted with type "nmatrix.501" but type "nmatrix.73" was supplied The problem is that I don't get the message for

Hopefully simple question: What is the best way to name, and treat factor columns for data that has lots of columns? This is my column list: id pID50 D.1 D.2 D.3 D.4 D.5 , etc. all the way to D.185 I was under the impression from several R examples in pls that if you name your columns like above, you should be able to simply call all the D factors with "D", instead of going in and

Hi, I have the following question about creating data frames. I want to create a data frame with 2 components: a vector and a matrix. Let me use a simple example: y <- rnorm(10) x <- matrix(rnorm(150), nrow=10) Now if I do dd <- data.frame(x=x, y=y) I get a data frame with 16 colums, but if, according to the documentation, I do dd <- data.frame(x=I(x), y=y) then str(dd)

Hi. I was used to draw 2D plot to show distribution of my samples. It was very powerful in small samples. Recently , I handle a lot of type of samples as more 15. so, I want to use more dimention. I was used that I conduct plsda function and draw biplot, such as, p1=plsda(mw, sp) biplot(p1) How can I draw 3D graph with my data?? I don't know exactly numerical value each spot. please,

In the lm function the summary(lmobject) we have adjusted.r square and f statistics Do we have similar to the pls package and how to get it -- View this message in context: http://r.789695.n4.nabble.com/R-square-and-F-stats-in-PLS-tp3924484p3924484.html Sent from the R help mailing list archive at Nabble.com.

Hi, Currently I have a dataset of 2400*408. And I would like to apply PCR method to study the any correlation between the tests. My current data is in data.frame and I have formed horizontal(1-407) to be the exact data, and (408) to be my results data(Yes and No) I have also binarized these Yes and No to 1 and -1s. However, when I refer to PCR manual on R, the example of yarn.pcr <-

Dear all , I want to do PRESS (prediction error sums of squares) or the residual mean square error of prediction (RMSEP) which will give me value that is valid for 'future predictions of independent data'. I am using different methods for example, Multiple Linear Regression, LASSO regression, Ridge Regression, Elastic Net regression etc. I am wandering if there are

Version 2.0-0 of the pls package is now available on CRAN. The pls package implements partial least squares regression (PLSR) and principal component regression (PCR). Features of the package include - Several plsr algorithms: orthogonal scores, kernel pls and simpls - Flexible cross-validation - A formula interface, with traditional methods like predict, coef, plot and summary - Functions

Version 2.0-0 of the pls package is now available on CRAN. The pls package implements partial least squares regression (PLSR) and principal component regression (PCR). Features of the package include - Several plsr algorithms: orthogonal scores, kernel pls and simpls - Flexible cross-validation - A formula interface, with traditional methods like predict, coef, plot and summary - Functions