similar to: R CMD BATCH command

Hello, I am working on an unix SunOS machine ( sun4u sparc) and since the last release of R -R version 2.5.0 (2007-04-23) - , I have got troubles during the execution of batch command. For example with the instruction file multic.in >cat multic.in install.packages("multic","/bge/penel/R_install/R_2.5.0/lib/R/library",repos="http://cran.at.r-project.org")

I am using the 'glmmPQL function in the 'MASS' library to fit a mixed effects logistic regression model to simulated data. I am conducting a series of simulations, and with certain simulated datasets, estimation of the random effects logistic regression model unexpectedly terminates. I receive the following error message from R: Error in lme.formula(fixed=zz + arm.long,random=~1 |

Dear Group, What is the actual usage of "mtry" in ctree(), or specifically, ctree_control() since it's a single tree? Thanks in advance. Regards, Kelvin Lam, MSc. Analyst, Programming & Biostatistics Institute for Clinical Evaluative Sciences (ICES) 2075 Bayview Avenue, G179 Toronto, ON M4N 3M5 (416) 480-4055 Ext. 3057 Fax: (416) 480-6048 email:

Dear R-users, I am trying to modify the mfp() function in the mfp package to model Weibull survival using fractional polynomials approach. However, I keep getting into trouble when mfp.fit and other "hidden" functions can't be found. I did find some of them in Splus but it's getting nowhere. I wonder if any of you can give me some tips on how to modify it or any experience

I've used that patch to close the hole. This patch is temporary and doesn't fix real trouble maker - problem in new version in getenv() (after 6.3 it got changed to something monstrous and non-working right if environment has only one variable), hope it will get fixed soon. *** rtld.c.orig Tue Dec 1 16:55:13 2009 --- rtld.c Tue Dec 1 16:55:55 2009 *************** *** 357,374 ****

Hi, A recent change has R failing to compile (for me) on ppc OSX 10.4.8 like this: ../../../../R-devel/src/main/datetime.c: In function `reset_tz': ../../../../R-devel/src/main/datetime.c:511: error: void value not ignored as it ought to be I suspect there is some sort of configure magic that needs to happen to get the POSIX compatible unsetenv on OSX. Here's what I think is the

Hello R users and developers, I had a problem when I tried to install the last version of R-devel. I know that this R version is an unstable version and that this problem may be irrelevant. I am maintaining a R package thus I check if this package can be installed with the development version. ( Everinthing is fine with the R-patched) The details are the following: My machine: System:

Hello all, After reading through the Wiki and archives, I decided to take a stab at installing * on Solaris 9 SPARC. I checked it out via CVS last night as well as about an hour ago, and have run into a compile problem that I can't quite figure out. After running into some unlisted dependencies, such as popt, things are almost compiling. Right now the make bombs when trying to find setenv

http://bugzilla.mindrot.org/show_bug.cgi?id=757 Summary: KRB5CCNAME inherited from root's environment under AIX Product: Portable OpenSSH Version: -current Platform: PPC OS/Version: AIX Status: NEW Severity: minor Priority: P2 Component: sshd AssignedTo: openssh-bugs at mindrot.org

Hello, Linux has a recvmmsg() system call which allows to achieve several recvfrom() at a time. The patch below makes tinc use it (patch against 1.1-pre11). Basically the patch turns the handle_incoming_vpn_data variables into arrays (of size 1 when recvmmsg is not available, and thus compiled the same as before), and makes the code index into the arrays. You may want to use interdiff -w

Dear helpers, I'm trying out the embedFonts() to embed fonts into my pdf files. However, when I inspect the new pdf with a program designed to look for embedded fonts, I see that the fonts have in fact not been embedded. Below are my calls. R version 2.13.1 (2011-07-08) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i386-pc-mingw32/i386 (32-bit)

Cool! I tried to use truss -p $pidof dovecot process, and I got the following. - (Complete trace here: http://pastebin.com/pwL5EU3q) For me it doesn't seem right. - Have you guys seen anything like this before? read(55,"\0",64) = 1 (0x1) sigprocmask(SIG_SETMASK,0x0,0x0) = 0 (0x0) wait4(-1,{ EXITED,val=89 },WNOHANG,0x0) = 19061 (0x4a75) write(59,"28 19061 DEFAULT-FATAL

Hello, Up to R 2.6.2, I used to start Tcl *without Tk* (I need only Tcl for some part of my work, like a socket server written in Tcl only, for instance) with this code under Mac OS X (particularly on this system, because I don't want to start X11 just to use Tcl code, which is required for Tk!): > Sys.unsetenv("DISPLAY") > library(tcltk) I got then the message

Hello, in the BSD Authentication system the login script can request environment variables to be set/unset. The call to auth_close() in auth-passwd.c does change the current environment, but those changes are lost for the child environment. It would be really useful to add some kind of mechanism to get those changes into the child environment. I've added two possible solutions. Both

After done an update to dovecot-2.2.30.2 my connection is broken since days. all what I try every time the same error: Jun 15 00:02:18 auth: Error: auth: environment corrupt; missing value for DOVECOT_ Jun 15 00:02:18 auth: Fatal: unsetenv(RESTRICT_SETUID) failed: Bad address Jun 15 00:02:18 master: Error: service(auth): command startup failed, throttling for 2 secs I try this: # doveadm

Dear R developers I am currently working on the seqinR package. The seqinR package allows a remote access to biological databases via a socket connection. We are using the functions socketConnection, writeLines and readLines to open the socket, send request to the server and receive response from the server respectively. Recently, a new function implemented in the socket server allows

Hi, While I suspect that this is an issue peculiar to my machine (Debian squeeze amd64, R version 3.0.1, up-to-date packages), I'm hoping that somebody on this list may be able to give me suggestions on how to troubleshoot and fix the following: > library (snow) > cl <- makeSOCKcluster(c("localhost","localhost")) sh: 1: RunSnowWorker: not found I presume/hope

Dear Martin, What's the ETA for _R_CLASS_MATRIX_ARRAY_=TRUE to become the new unconditional behavior in R devel? Thanks! H. On 11/21/19 08:57, Martin Maechler wrote: > > TLDR: This is quite technical, still somewhat important: > 1) R 4.0.0 will become a bit more coherent: a matrix is an array > 2) Your package (or one you use) may be affected. > >

Hello, I am trying to compile sources of R-1.5.0 on a Mandrake 8.1 linux box. For Fortran compiler needs, I downloaded and installed a g77 rpm. But the configure step fails with following output. I would like to know if any of you had similar problem and how you solved. Thanks in advance. Mohan ------------------- configure output ------ checking for g77... g77 checking whether we are using the

Hi, I need to back up all of /home on a remote server for which I have root access but cannot (and will not) do root logins via ssh. Of course if I attempt to rsync files that I don't own, rsync skips over them. My account is allowed to sudo, if that helps. How can I use rsync to do the following: rsync -av --compress --progress --delete -e me@SomeRemoteServer:/home