similar to: R CMD CHECK and require() / library() methods

Thanks - it is indeed the first '.' that's the problem... Crispin > -----Original Message----- > From: Liaw, Andy [mailto:andy_liaw at merck.com] > Sent: 07 October 2003 15:21 > To: Crispin Miller > Subject: RE: [R] .First.lib doesn't appear to be running after calling > lib rary() > > > I put .First.lib in the file "zzz.R", and it works for

Hi, I've got a quick question about file permissions and packages... I'm creating my own package, and am having problems with its vignette not being seen when I install it into R... As I understand it, the permissions of the source tree should be as follows: o Directories - drwxrwxr-- o Files - -rw-r--r-- Everything builds and runs through 'R CMD check' fine with

Hi, Forgive a very basic question... I need to take two lists-of-lists, and apply a function to each pair of elements in the lists to return a single list... For example l1 <- list(1:5,6:10,2:15) l2 <- list(1:8,4:12,1:19,4:20) I could easily do an lapply across each of them, but is there a function that does a sort-of pairwise-apply across both together? Does anybody know of a good

Dear all, we have an exciting PhD position applying HPC to the analysis of large scale cancer datasets. The post will suit an applicant from a strong computational background who wishes to apply their knowledge to help develop a better understanding of the processes that control how tumours develop. Details below:- High Performance Computing applied to cancer research: Computational analysis of

Hi - so I've dusted off the C bits of my brain and gotten a library written for my package... It passes R CMD check ok, and I've put a file called '.First.lib.R' in the pacakge's 'R' subdirectory. Its permissions are 644. It says: .First.lib <- function(lib,pkg) { library.dynam("foo",pkg,lib); require(affy,quietly=TRUE); } I build and INSTALL

Begin forwarded message: > From: Barry Leiba <barryleiba at computer.org> > Date: 20. marraskuuta 2012 2.44.51 UTC+2.00 > To: imap5 at ietf.org, imapext at ietf.org, imap-protocol at u.washington.edu, imap-use at u.washington.edu > Subject: [imapext] News about Mark Crispin > Reply-To: imap5 at ietf.org > > Everyone here knows Mark Crispin -- or at least knows who he

Hi, I've got a quick question about what happens when indexing into matrices with a single column. I was wondering if anyone can help ... For example: > x <- matrix(1:10) > y <- cbind(x,x) > x[4:6,] [1] 4 5 6 > y[4:6,] [,1] [,2] [1,] 4 4 [2,] 5 5 [3,] 6 6 > class(x[4:6,]) [1] "integer" > class(y[4:6,]) [1] "matrix" It seems that R

Rowland said: >> Can you point me to a Release Changes note that says explicitly that Winbind is now required or that mapping of AD users to local unix accounts has been removed? >> >> Crispin >Yes, see here: > https://wiki.samba.org/index.php/Samba_4.8_Features_added/changed#Domain_member_setups_require_winbindd > >Samba did a lot of things back in the NT4-style

Hi, I decided to upgrade to 1.8 today... :-) Anyway, we are writing our own package that is dependent on a bioconductor library - 'affy'. I've checked and when I fire up R, library(affy) behaves as expected... so it all seems to be installed and OK... In the DESCRIPTION file in my package source I have the line: Depends: affy When I run R CMD check simpleaffy I get to: ... *

Hi, I have a string representing an environment: "bob" And an environment > bob <environment: 0x3901234ac> How do write a function that takes the string and returns the environment? Crispin -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}

>> I have a function that applies a wilcoxon test to 12 sets of about a quarter of a million pairs > ... and let me guess: everything is significiant to an almost arbitrary > value of \alpha? :-) For each of quarter of a million sets, I do a wilcoxon between two pairs each containing twenty numbers... I do this 12 times... > > (and takes about 3 hours). I've replaced the

There seems to be a protocol mismatch between eudora and dovecot when using pop. The login interchange with, for example, mozilla, is as follows: MO: [connects] DC: +OK dovecot ready. MO: CAPA DC: +OK DC: CAPA DC: TOP DC: USER DC: UIDL DC: RESP-CODES DC: STLS DC: SASL PLAIN DC: . MO: USER yyy DC: +OK MO: PASS xxxxxxxx DC: +OK Logged in. But with eudora, with apparently equivalent

Hi, Does anyone have any advice on speeding up R functions (short of re-implementing them in C :-) )? I have a function that applies a wilcoxon test to 12 sets of about a quarter of a million pairs (and takes about 3 hours). I've replaced the inner loop I had originally with a function call via mapply, and also considered different approximations of the wilcoxon, rather than that which is

Hi, Does anyone know whether it is possible to construct a colour for plotting with an alpha value as well as simply specifying rgb values? Crispin -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}

###### ## ## ###### ## ### ## ## ###### ## # ## ## ## ## ### ## ###### . ## ## . ######. Secure Networks Inc. Security Advisory March 2, 1997

Rowland said: >> Is there a set of settings to restore the mapping of AD users to pre-existing Unix Users? >No >> >> Does the official Samba distributed project source continue to support AD Users mapping to pre-existing Unix Users? >I do not think it ever did. I found this reference quickly from google describing the previous behavior. Winbind was always optional

Hi, We're looking for a number of people to join our group (Applied Computational Biology and Bioinformatics -- ACBB) and applying state of the art techniques (see for example, xmap.picr.man.ac.uk) to integrate, analyse and interpret datasets arising from the latest generation of microarrays (including exon, SNP and tiling arrays), quantitative mass-spectrometry and next generation

Hi, I hope you don't mind me posting this to the list: We are seeking a postdoctoral scientist to join the Applied Computational Biology and Bioinformatics group at the Paterson Institute for Cancer Research. The role will be to develop novel approaches for the analysis of high throughput genomic data, such as those arising from Affymetrix microarray experiments. We are an

Dear all, Im' using matrix() and layout() to set up a fairly complex plot... I was wondering if anyone can point me to something that describes the appropriate incantations to determine, given a text string, the maximum font size that will allow it to fit into the current plotting area without being trunucated? best wishes, Crispin --------------------------------------------------------

Hi, We are seeking a postdoctoral scientist to join the Applied Computational Biology and Bioinformatics group at the Paterson Institute for Cancer Research. The role will be to develop novel approaches for the analysis of high throughput genomic data, such as those arising from Affymetrix microarray experiments. We are an interdisciplinary team that brings together skills in computer