similar to: Problem in loading all packages all at once

Dear R-List member, I have installed the new version of R on my PC (see system details below). I can start the RGui with http_proxy succesfully. However, I do encounter two problems: 1) After starting the Rgui the following error message is displayed (vertical dots represent omissions of output): R : Copyright 2003, The R Development Core Team Version 1.7.0 (2003-04-16) . . . . Error in

Hi. I would like to know how to start an embedded R session, and avoid datasets and the standard library packages to be loaded on startup. I've been looking at littler's code (so this is partly a question to Dirk Eddelbuettel...): > /* We don't require() default packages upon startup; rather, we > * set up delayedAssign's instead. see autoloads(). >

Consider this script (with h5 installed): $ cat test.R library(h5) name <- tempfile() f <- h5file(name) file.remove(name) $ Rscript test.R Error in initialize(value, ...) : cannot use object of class "character" in new(): class "H5File" does not extend that class Calls: h5file -> new -> initialize -> initialize Execution halted $ /usr/lib64/R/bin/R --slave

I used packages 'fields". when I load workspace again, then do installation again. I get the following error. I read R for Windows FAQ (4.8 see below), but I still can't figure it out. Does anyone can help me out? Thanks, jlm > install.packages("fields",repos="http://streaming.stat.iastate.edu/CRAN/ ",); trying URL '

Also, check the settings of R_HOME and/or R_LIBS. Bill Dunlap TIBCO Software wdunlap tibco.com On Sun, Sep 8, 2019 at 9:58 AM William Dunlap <wdunlap at tibco.com> wrote: > Look at section 6.1 of the R Installation and Admin manual. > > 6.1 Default packages > > The set of packages loaded on startup is by default > > > getOption("defaultPackages") > [1]

Hi Dirk, Thanks for the solution. Now I know the work-arounds, but still don't quite get it. Why does R_DEFAULT_PACKAGES has anything to do with library(methods)? If library(h5) works, it should just work, not depend on an environment variable. Rscript is not consistent with R, that's my confusion. Steve 2017-12-26 20:46 GMT+08:00 Dirk Eddelbuettel <edd at debian.org>: >

I realize this is basic, but I can't figure out the syntax for setting options for R Commander. I'm running Linux Mint and want to increase the R Commander font sizes. I see that there are (apparently command line) options to do so. I have a desktop launcher with the following command line: sh -c 'R_DEFAULT_PACKAGES="$R_DEFAULT_PACKAGES Rcmdr" R "$@"' Can

Thank you Dan but it isn't my tests that are failing (all of them pass without problem) but one of the examples from the inst/examples directory. I did try, however, to start R with the environmental variables as you suggest but it had no effect on my tests. Charles On Wed, May 13, 2015 at 1:51 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > > > ----- Original Message

Hi, I am interested in customizing the installation of R. I have gone through the ?R Installation and Administration? manual. But some of the stuff is not clear to me and I would like to get clarifications on the following points (for a Windows installation with R_HOME=C:\\R\\R-2.9.1 ) : 1. I understand that I need to create a file, .Renviron with the following path : R_HOME\\etc\\.Renviron where

Dear R developers, I've been experimenting with embedding R X11 windows into another application using KDE's QXEmbed on linux. Attempting to do so will crash R (with R 2.4.0, trunk, and I know the bug has been around in prior versions). I used to think this was related to bug #848, but I'm not sure, if / how the solution suggested there still applies to current versions of R.

[whit at linuxsvr R.packages]$ sudo R CMD INSTALL portfolio.construction * Installing to library '/usr/local/lib64/R/library' * Installing *source* package 'portfolio.construction' ... ** R ** preparing package for lazy loading Loading required package: fts Loading required package: quadprog Loading required package: Rexcelpoi terminate called after throwing an instance of

I have been struggling with this error message - and think I finally understand it's context. Start Line by line debugging shows me the function works: ... > saveRDS(val, mapfile) > val $variables $variables$IANA_HTTP_status_code_db [1] 0 1256 $variables$IANA_URI_scheme_db [1] 1256 3458 $variables$table_of_HTTP_status_codes [1] 4714 830 $references named list() $compressed

On 26/12/2017 9:40 AM, Dirk Eddelbuettel wrote: > > On 26 December 2017 at 22:14, Sun Yijiang wrote: > | Thanks for the solution. Now I know the work-arounds, but still don't > | quite get it. Why does R_DEFAULT_PACKAGES has anything to do with > | library(methods)? > > Because it governs which packages are loaded by default. And while R also > loads

Dear all, While I was trying to build R source, I found an error at datasets package (there was no error before that) ../../../library/datasets/R/datasets is unchanged Error in dir.create(Rdatadir, showWarnings = FALSE) : file name conversion problem Calls: <Anonymous> -> <Anonymous> -> dir.create Execution halted make[2]: *** [all] Error 1 make[1]: *** [R] Error 1 make: ***

Hi, I got the following problem when I type make. The error is not enough verbose to me so I can find the problem. Please cc me, I'm not subscribed. Thanks, Mathieu --------------------------- make[4]: `vfonts.so' is up to date. building system startup profile building package 'base' all.R is unchanged ../../../library/base/R/base is unchanged dyld: lazy symbol binding failed:

Full_Name: Karsten Tabelow Version: R-2.3.1 OS: AIX5.3 Submission from: (NULL) (62.141.176.2) Specification in config.site: CC=xlc_r CFLAGS='-O -qstrict' F77=xlf_r FFLAGS='-O -qstrict' SHLIB_LDFLAGS='-G' DYLIB_LDFLAGS='-G' LDFLAGS='-brtl' CXX=xlc++_r CXXFLAGS='-O -qstrict' Complilation error in src/main/printutils.c: "printutils.c",

Hi, I am getting this error when I run 'make' under src/library/base: ../../../library/base/R/base is unchanged ../../../bin/R: bad substitution make: *** [all] Error 1 I traced it down to the following line in src/library/base/Makefile: @cat $(srcdir)/makebasedb.R | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C $(R_EXE) --slave > /dev/null I am trying to build R-2.6.2 on a

A couple of my colleagues are having problems building R-3.2.4 on Mac OS X El Capitan somehow related to libiconv. I personally don't have any problems on either of my Macs. I'm hoping thie make log might trigger something in the readers of this list: gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib

On 17/12/2015 9:06 AM, Michael Felt wrote: > More experimenting with calling commands: > > tools:::foobar() > Error: Line starting 'Package: tools ...' is malformed! > > tools::foobar() > Error: Line starting 'Package: tools ...' is malformed! These both do a loadNamespace("tools"). > > Tools:::foobar() > Error in loadNamespace(name)

I was trying to ByteCompile a package that I made. The package compiles successfully with byte compile set to FALSE. When I set ByteCompile to TRUE, I receive the following error message while doing R CMD INSTALL /usr/lib/R/bin/INSTALL: line 34: 9964 Done echo 'tools:::.install_packages()' 9965 Segmentation fault | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs