similar to: BRugs command modelGenInits() crashes R version 2.4.1 (windows)

Hi there, I installed the latest OpenBUGS version (3.0.3) in program files folder but it seems that bugs use its own version of OpenBUGS. here is part of the message bugs returns ..... Welcome to BRugs running on OpenBUGS version 2.2.0 beta how can i configure BRugs to use the mine version of OpenBUGS? Cheers, SK --------------------------------- [[alternative

I've run into persistent problems with OpenBUGS crashing when using BRugs .53 and .71, and am hoping someone has suggestions. There is obviously something unusual going on in my environment, but I'm at a loss as to where to begin to try to solve it. In a nutshell, what happens is that, as soon as I call "modelCheck()" in BRugs, it gets an error or crashes ... but only some of

Hi, this is the first announcement of a *developer version* of the R package BRugs, which is based on OpenBUGS 2.1.0. OpenBUGS 2.1.0 has been released earlier this week (http://mathstat.helsinki.fi/openbugs/). BRugs contains a complete OpenBUGS installation as well as R code to access OpenBUGS functionality from R. Simply install the package, load it and say ?BRugs and ?BRugsFit

Hello. In this post: http://finzi.psych.upenn.edu/Rhelp10/2010-March/233815.html Uwe Ligges suggests using BRugs rather than R2WinBUGS under windows. He also notes that it is not in the main CRAN repository, but it is in "extras" which is a default repository under windows. I have OpenBUGS 3.1.0 (the latest that has a native Linux version which is no longer called linBUGS)

Hello, all. When I try to install the most recent BRugs package (the one that uses version 3.1.2), found here: http://www.openbugs.info/w/UserContributedCode I get the following error: > utils:::menuInstallLocal() Error in gzfile(file, "r") : cannot open the connection In addition: Warning message: In gzfile(file, "r") : cannot open compressed file

Hi all, There seems a problem when I was installing this package. This question has been frequently asked but I didn't find any clue to solve it from previous answers and comments. And please forgive me if my question has been really answered before! My system is windows xp and R is 2.7x, when I hit in R install.packages("BRugs") the following warnings are output: Warning in

I installed XCode, XQuartz and OpenBUGS on my Mac using WINE. When I tried to test my installation I received the following error. If correct, BRugs does not exist for R 2.15.1. Is there a means to get arrange this problem? Thanks Paul The following code is an example from R Help bugs: > schools.sim <- bugs(data, inits, + parameters, model.file, n.chains=3, + n.iter=1000, +

Hello I need to define complex likelihoods in BRUGS-> mixed multinomial probit & random coefficient tobit for panel data can I use the likelihood that i`ve written in R in the BRUGS model? if not, how can I deal with complex likelihoods in BRUGS, there is no integrate function in BRUGS? is there any possibility to this without writing my own sampler in R? Thanx, Johannes

Dear all, I just wrote a script to have each of my three mcmc chins running on a different computer core to improve computation speed. To do it I use the function sfLapply from the package snowfall. Before using parallell computation, I did my diagnostic analyses just after the model updating, but now I have to save the coda before. Using the CODA package, it is possible to load the outputs in a

Hi all, Does anyone know where to download the "BRugs" package? I did not find it on r-project website. Thanks. NL

Respected Sir, With reference to my mail to you dated 8th January,2013, and the reply by you dated 9th January, 2013, I am sending this mail to you. I had a problem regarding running a program in the latest version of the "BRugs" package in R 2.15.1 and 2.15.2. I want to mention here that this program runs well to others, who are running it using the earlier version

I'm using eleaps to build a forward selection algorithm iteratively, but the program unexpectedly crashes. In fact, it completely closes my session in RStudio. The first 39 steps work fine, but on the 40th step, it unexpectedly stops with no errors. I've isolated the error to the code snippit below. There are 39 predictors, and I'm searching for the 40th best. I've passed in a

Hi, Is there anyone know if BUGS language allows the combination of variables as response such as Y[i] <- a*X1[i]+b*X2[i] Y[i] ~ dnorm(c,d) It seems doesn't work in my model. The problem is between two ######. The error message is > modelCheck("BayesBioMarker.BUGS") model is syntactically correct > modelData(paste("BUGS_data.txt",sep="")) data

Hi. I am trying to analyze with BRugs the Box-Tiao variance components example in WinBUGS. The output from BRugs, mean sd MC_error val2.5pc median val97.5pc start sample sigma2.btw 681.9 1161 10.89 0.7016 253.8 4232 25001 100000 sigma2.with 4266.0 1246 4.92 2480.0000 4057.0 7262 25001 100000 doesn't match the output from WinBUGS, node mean

Hi all, I tried to follow an online tutorial to run openBUgs but the package BRugs has been removed from R repository. Could someone provide a link for where to download BRugs? Thanks a lot! -- View this message in context: http://www.nabble.com/Where-to-download-BRugs-tp17411410p17411410.html Sent from the R help mailing list archive at Nabble.com.

Hi R users, I am trying to call openbugs from R. And I got the following error message: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ model is syntactically correct expected the collection operator c error pos 8 (error on line 1) variable ww is not defined in model or in data set [1] "C:\\DOCUME~1\\maomao\\LOCALS~1\\Temp\\RtmpqJk9R3/inits1.txt"

Hi, I have a strange behaviour of openBUGS and WinBUGS when I start them from R. Version: R: 2.10.1 openBUGS: 3.07 WinBUGS: 1.43 R2WinBUGS: 2.1-16 BRugs: 0.5-3 I have a model and data without initial start values. If I use the stand alone versions of openBUGS and WinBUGS I don't have any problems and I get what I want. If I use function bugs() from R2WinBUGS- resp. BRugs-Library then

HI I use glm in R to do logistic regression. and treat both response and predictor as factor In my first try: ******************************************************************************* Call: glm(formula = as.factor(diagnostic) ~ as.factor(7161521) + as.factor(2281517), family = binomial()) Deviance Residuals: Min 1Q Median 3Q Max -1.5370 -1.0431 -0.9416 1.3065 1.4331 Coefficients:

Hi, In the chisq.test(), if the expected frequency for some categories is <5, there will be a warning message which says Warning message: Chi-squared approximation may be incorrect in: chisq.test(x, p = probs) I am wondering whether there are some methods to get rid of this mistake... Seems the ?chisq.test() doesn''t provide more options to solve this problem. Or, the only choice is

Hi Running R v2.0 on SuSe linux 8.2. I'm trying to build a package (which built perfectly on Windows...) on Linux, and I ran: R CMD check mypackage I got: * checking mypackage-maual.tex ... ERROR LaTeX errors when creating DVI version This typically indicates Rd problems OK, there are no problems with my Rd - I got 3 warnings but they were all expected, and the whole package builds find