similar to: Packages in R for least median squares regression and computing outliers (thompson tau technique etc.)

Hi I am trying to get a table of means of parameter 1 across BINS of parameter 2. I am working in proteomics and a sample of my data is as follows cluster-age clock-rate(evolutionary rate) scopclass 0.002 10 A 0.045 0.1 B 0.13 15 A 0.15 34 D .... .... ....

Hi I am new to R programming and am using subset to extract part of a data as follows names(dataset) = c("genome1","genome2","dist","score"); prunedrelatives <- subset(dataset, score < -5); However when I use unique to find the number of unique genomes now present in prunedrelatives I get results identical to calling unique(dataset$genome1) although

Hi I have data of the following form ID age member_FLAG 1 25 Y 2 36.75 N 3 75.5 N ......... ......... I want to get a histogram of this data showing distribution of member_flag in each age-bin i.e. how many values in each age bin have a member_flag of 'Y' and how many have 'N'. I was able to do the same using barplot2. However I also need similar

Hi I am looking for a package that 1. reads in a phylogenetic tree in NEXUS format 2. given two members/nodes on the tree, can return the distance between the two using the tree. I came across the following packages on CRAN ouch, ape, apTreeShape, phylgr all of which seem to provide extensive range of functions for reading in a Nexus-format tree and performing phylogenetic analyses, tree

Hi I have a table that goes data cluster_ac clockrate age class 7337 0.9 0.001 alpha_proteins 7888 0.1 0.78 beta proteins etc The class column can have 7-8 different unique values While the clockrate and age columns are floats varying from 0 to 1. I wish to get the average clockrate across each of the classes for this data. I would appreciate your help

Hi Thanks much for the prompt response to my earlier enquiry on packages for regression analyses. Along the same topic(?), I have another question about which I could use some input. I am retreiving data from a MySQL database using RODBC. The table has many BLOB columns and each BLOB column has data in the format "id1 \t id2 \t measure \n id3 \t id4 \t measure...." (i.e. multiple rows

Hi I am trying to process tabular data as follows: Data in the input file is of the form genome1 genome2 tree-dist log10escore Genome1 and genome2 are alphabetic. Tree-dist and log10escore are numeric. I wish to extract only those rows from this table where the log10escore is less than -3. data <-read.table(filename); data$log10escore = data$log10escore[ data$log10escore < -3]; I

Does anyone can provide a code to implement least median squares regression in R (not using the lqs function or calling C functions)? Reason: teaching/learning purposes Thanks PM

Hi I have a dataframe which has 3 columns of numeric data A,B,C each of which has been obtained independent of the other. We are trying to find out, which of A or B cause C i.e. We are hypothesising that C is the effect and either A or B, not both is the cause. i.e. A causes C and this cause-effect relationship explains B. The data for A contains more noise than that for B. We are working with

Hi I am a newbie to R and am using the lm function to fit my data. This optimization is to be performed for around 45000 files not all of which lend themselves to optimization. Some of these will and do crash. However, How do I ensure that the program simply goes to the next file in line without exiting the code with the error "Error in lm.fit(x, y, offset = offset, singular.ok =

change from v3: add x86 vcpu preempted check patch change from v2: no code change, fix typos, update some comments change from v1: a simplier definition of default vcpu_is_preempted skip mahcine type check on ppc, and add config. remove dedicated macro. add one patch to drop overload of rwsem_spin_on_owner and mutex_spin_on_owner. add more comments thanks boqun and Peter's suggestion.

change from v3: add x86 vcpu preempted check patch change from v2: no code change, fix typos, update some comments change from v1: a simplier definition of default vcpu_is_preempted skip mahcine type check on ppc, and add config. remove dedicated macro. add one patch to drop overload of rwsem_spin_on_owner and mutex_spin_on_owner. add more comments thanks boqun and Peter's suggestion.

Based on some tests we ran, it seems the biggest performance hit you get from running within domU is from disk I/O. We did some mysql read and write tests, and for both, our performance is about half that compared to native. Has that been others'' experience? Is there any way to make this better? We are using physical partitions. In contrast, cpu/memory tests appear to be near

change from v5: spilt x86/kvm patch into guest/host part. introduce kvm_write_guest_offset_cached. fix some typos. rebase patch onto 4.9.2 change from v4: spilt x86 kvm vcpu preempted check into two patches. add documentation patch. add x86 vcpu preempted check patch under xen add s390 vcpu preempted check patch change from v3: add x86 vcpu preempted check patch change from v2: no code

change from v5: spilt x86/kvm patch into guest/host part. introduce kvm_write_guest_offset_cached. fix some typos. rebase patch onto 4.9.2 change from v4: spilt x86 kvm vcpu preempted check into two patches. add documentation patch. add x86 vcpu preempted check patch under xen add s390 vcpu preempted check patch change from v3: add x86 vcpu preempted check patch change from v2: no code

2016-10-19 06:20-0400, Pan Xinhui: > This is to fix some lock holder preemption issues. Some other locks > implementation do a spin loop before acquiring the lock itself. > Currently kernel has an interface of bool vcpu_is_preempted(int cpu). It > takes the cpu as parameter and return true if the cpu is preempted. Then > kernel can break the spin loops upon on the retval of

2016-10-19 06:20-0400, Pan Xinhui: > This is to fix some lock holder preemption issues. Some other locks > implementation do a spin loop before acquiring the lock itself. > Currently kernel has an interface of bool vcpu_is_preempted(int cpu). It > takes the cpu as parameter and return true if the cpu is preempted. Then > kernel can break the spin loops upon on the retval of

From: Zengruan Ye <yezengruan at huawei.com> This patch set aims to support the vcpu_is_preempted() functionality under KVM/arm64, which allowing the guest to obtain the vcpu is currently running or not. This will enhance lock performance on overcommitted hosts (more runnable vcpus than physical cpus in the system) as doing busy waits for preempted vcpus will hurt system performance far

From: Zengruan Ye <yezengruan at huawei.com> This patch set aims to support the vcpu_is_preempted() functionality under KVM/arm64, which allowing the guest to obtain the vcpu is currently running or not. This will enhance lock performance on overcommitted hosts (more runnable vcpus than physical cpus in the system) as doing busy waits for preempted vcpus will hurt system performance far

change from v4: spilt x86 kvm vcpu preempted check into two patches. add documentation patch. add x86 vcpu preempted check patch under xen add s390 vcpu preempted check patch change from v3: add x86 vcpu preempted check patch change from v2: no code change, fix typos, update some comments change from v1: a simplier definition of default vcpu_is_preempted skip mahcine type check on ppc,