similar to: PlotAffyRNAdeg on Estrogen Data

Hi all, When I ran a script containing the following codes: png(paste(savepath,"a_rnaplot.png",sep = ""),width = fwidth, height = fheight,pointsize = fpointsize); data_deg <- AffyRNAdeg(data_cel) plotAffyRNAdeg(data_deg,col=cols,lty=1,lwd = "2") #a <- par("fin") legend("bottomright",sampleNames(data_cel),col=cols,lty=1)

Often, when exploring a dataset, I'd like to plot several very different Y variables against the same X variable, in panels stacked one over the other. Is there an easy way to do this? I'd like to achieve an elegant look similar to the look achieved by lattice in conditioned plots--for instance no space between panels. But unlike in straightforward conditioned plot, each panel may be on a

Hello, I've tried to analyze some data with a CMH test. My 3 dimensional contingency tables are 2x2xN where N is usually between 10 and 100. The problem is that there may be 2 strata with opposite counts (the 2x2 contigency table for these are reversed), producing opposite odds ratios that cancle out in the overall statistics. These opposite counts are very important for my analysis, since

Dear R community, I have trouble implementing a nested variance-covariance matrix in the lme function. The model has two fixed effects called End and logpgc, the response variable is the logarithm to base 2 of Intensity ( log2(Intensity) ) and the random effects are called Probe and ProbeNo. The model has the following nesting structure: A Pixel is nested within the ProbeNo,the ProbeNo is

Hi, at the moment I'm trying to understand the limma/affy Packages. I've tried every example I could find to try and understand the ways to create design and contrast matrices. I must admit though, that I can't figure it out. I did a few times the estrogen files from the book "bioinformatics and computational biology solutions using R and Bioconductor". I know it's a

Hello: Is there a way to get a mean from values stored in different rows? The data looks like this: YEAR-1, JAN, FEB, ..., DEC YEAR-2, JAN, FEB, ..., DEC YEAR-3, JAN, FEB, ..., DEC What I want is the mean(s) for just the consecutive winter months: YEAR-1.DEC, YEAR-2.JAN, YEAR-2.FEB YEAR-2.DEC, YEAR-3.JAN, YEAR-3.FEB etc. Thanks.

Full_Name: Kem Phillips Version: 2.7.1 (2008-06-23) OS: Windows Xp professional Submission from: (NULL) (98.221.200.108) The Hmisc function describe fails, giving the error message: Error in formatDateTime(dd, atx, !timeUsed) : could not find function "format.dates" Loading the chron package, where function dates apparently resides, does not fix the problem. Note

Hi, Is there a way to turn off the automatic inclusion of "./" at the beginning of a path specified in an \SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like

Hello ... >From the icecast website (www.icecast.com) i found the following info > (i copy-pasted it): { Note that icecast-1 is deprecated and unsupported, and may possibly induce nausea in small children, hair loss in men, and estrogen fluctuations in women. If, for some reason, you absolutely must have ancient versions of icecast (possibly for historic preservation), download icecast

Hi Assorgia, Thanks for the flash animation. I think Icecast1 might be the solution. I am just a little bit scared by the message "Note that icecast 1 is deprecated and unsupported, and may possibly induce nausea in small children, hair loss in men, and estrogen fluctuations in women" that appears on the download page. I have a nice blond hair of "Principe Azzuro" that I

Dear Dirk, Yes, I know, however forget for one moment R. If I use tar independent of R it still should not create these hidden files. BTW, do you know where these hidden files are stored on the Mac? Best regards, Christian On 09/26/15 23:01, Dirk Eddelbuettel wrote: > > On 26 September 2015 at 22:41, cstrato wrote: > | Dear Simon, > | > | Thank you very much for your help, it

Some time ago I was allowed to discuss "Diamond Graphs", and whether they would be useful in R, in this mailing list. The August 2003 issue of The American Statistician has finally arrived here and I have been able to read the article. A number of points of interest arise. 1. The article is "A Diamond-Shaped Equiponderant Graphical Display of the Effects of Two

Hi Leo, Like you, I know think the problem doesn't come from the headers with Icecast. Shoutcast needs some header information before accepting to send the stream but not Icecast. The flash animation doesn't work with Icecast either. I tried adding the mp3 extension to my live stream and to serve a static mp3 through Icecast but I had the same results. Serving a static mp3 through apache