similar to: Logistic regression model + precision/recall

I am using logistic regression model (lrm) of package Design. Can some one please tell me how to calculate the average Area Under Curve (AUC) for n-fold cross-validation The help for lrm function says to do cross validation like this f <- lrm( cy ~ x1 + x2, x=TRUE, y=TRUE) val <- validate.lrm(f, method="cross", B=5) Now I dont know what to do with variable "val" to

Hi, I am trying to cross-validate a logistic regression model. I am using logistic regression model (lrm) of package Design. f <- lrm( cy ~ x1 + x2, x=TRUE, y=TRUE) val <- validate.lrm(f, method="cross", B=5) My class cy has values 0 and 1. "val" variable will give me indicators like slope and AUC. But, I also need the vector of predicted values of class variable

Hi, I have to build a logistic regression model on a data set that I have. I have three input variables (x1, x2, x3) and one output variable (y). The syntax of lrm function looks like this lrm(formula, data, subset, na.action=na.delete, method="lrm.fit", model=FALSE, x=FALSE, y=FALSE, linear.predictors=TRUE, se.fit=FALSE, penalty=0, penalty.matrix, tol=1e-7,

Dear List, I am trying to assess the prediction accuracy of an ordinal model fit with LRM in the Design package. I used predict.lrm to predict on an independent dataset and am now attempting to assess the accuracy of these predictions. >From what I have read, the AUC is good for this because it is threshold independent. I obtained the AUC for the fit model output from the c score (c =

Does anyone know how to get the C-index from a logistic model - not using the dataset that was used to train the model, but instead using a fresh dataset on the same model? I have a dataset of 400 points that I've split into two halves, one for training the logistic model, and the other for evaluating it. The structure is as follows: column headers are "got a loan" (dichotomous),

Dear Sir or Madam? I am a doctor of urology,and I am engaged in developing a nomogram of bladder cancer. May I ask for your help on below issue? I set up a dataset which include 317 cases. I got the Binary Logistic Regression model by SPSS.And then I try to reconstruct the model ?lrm(RECU~Complication+T.Num+T.Grade+Year+TS)? by R-Project,and try to internal validate the model through

Dear All, For logistic regression models: is it possible to use validate (rms package) to compute bias-corrected AUC, but have variable selection with AIC use step (or stepAIC, from MASS), instead of fastbw? More details: I've been using the validate function (in the rms package, by Frank Harrell) to obtain, among other things, bootstrap bias-corrected estimates of the AUC, when variable

I know how to compute the ROC curve and the empirical AUC from the logistic regression after fitting the model. But here is my question, how can I compute the standard error for the AUC estimator resulting form logistic regression? The variance should be more complicated than AUC based on known test results. Does anybody know a reference on this problem? [[alternative HTML version deleted]]

Hi Does anyone know whether the rms package provides a confidence interval for the bootstrap-corrected Dxy or c-index? I have fitted a logistic model, and would like to obtain the 95% confidence interval of the bootstrap-corrected area under the ROC curve estimate. Thanks. [[alternative HTML version deleted]]

Dear List, I am familier with binary models, however i am now trying to get predictions from a ordinal model and have a question. I have a data set made up of 12 categorical predictors, the response variable is classed as 1,2,3,4,5,6, this relates to threat level of the species ( on the IUCN rating). Previously i have combined levels 1 and 2 to form = non threatened and then combined 3-6 to

Hi Group, I have a question about obtaining the bias-corrected c-index using validate from the Design library. As an example, consider the example from help page: library(Design) ?validate.lrm n <- 1000 age <- rnorm(n, 50, 10) blood.pressure <- rnorm(n, 120, 15) cholesterol <- rnorm(n, 200, 25) sex <- factor(sample(c('female','male'),

I have the same problem of a prevous request HOW to use the survivalROC (or another library in R) to get optimal cut-off values? I want to use the time-dependent survivalROC package.according to the,reference material,it only gives a set of ordered cut-off values .eg. -------------------------------------------------------------------------------- data(mayo) str(mayo) attach(mayo)

I have the same problem of a previous request HOW to use the survivalROC (or another library in R) to get optimal cut-off values? I want to use the time-dependent survivalROC package.according to the,reference material,it only gives a partial set of ordered cut-off values .eg. -------------------------------------------------------------------------------- data(mayo) str(mayo) attach(mayo)

Hi Is there any link from where i can get complete information about the variables used in xen domu configuration in details like hvm, pae, acpi, apic, device_model etc and when to use which variable thansk _______________________________________________ Xen-users mailing list Xen-users@lists.xensource.com http://lists.xensource.com/xen-users

hi all i am trying to boot from rhel5.1 x86_64 image. with the following configuration kernel = "/usr/lib/xen/boot/hvmloader" builder=''hvm'' memory = 3048 name = "rhel51" vcpus=1 cpus = "" vif = [ ''type=ioemu, bridge=xenbr0'' ] disk = [ ''phy:/dev/cciss/c0d0p7,ioemu:hda,w'',

Hi, I need to build ROC curve in R, can you please provide data steps / code or guide me through it. Thanks and Regards Rithesh M Mohan [[alternative HTML version deleted]]

https://bugzilla.mindrot.org/show_bug.cgi?id=2729 Bug ID: 2729 Summary: Can connect with MAC hmac-sha1 even though it's not configured on the server Product: Portable OpenSSH Version: 7.5p1 Hardware: All OS: Linux Status: NEW Severity: security Priority: P5

Hi all, I would like to calculate the area under the ROC curve for my predictive model. I have managed to plot points giving me the ROC curve. However, I do not know how to get the value of the area under. Does anybody know of a function that would give the result I want using an array of specificity and an array of sensitivity as input? Thanks, Olivier -- View this message in context:

Hi everyone, I hope someone can help with some RadRails guidance... ( on WIndows XP ) I''ve been using UltraEdit and it''s Project management is good, but I feel RadRails should be better with the inbuild Ruby and RoR features... I''ve tried working through the tutorials on the web site for example the CookBook tutorial & it tells me to go the Generators Pane, which

On 23 Jan 2002, Nitin Agarwal <nitin.agarwal@timesgroup.com> wrote: > Hi, > I am Nitin from India working with a leading Indian newspaper "The Times > > of India". > We recently downloaded "rsync" and found it to be very useful and good > utility. > We tried to implement it between our main server and the DRS (Disaster > Recovery System), located